Locus 7726

Sequence ID 2L_DroMel_CAF1
Location 21,836,019 – 21,836,112
Length 93
Max. P 0.698468
window12404

overview

Window 4

Location 21,836,019 – 21,836,112
Length 93
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 80.62
Mean single sequence MFE -17.13
Consensus MFE -12.12
Energy contribution -13.00
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -1.68
Structure conservation index 0.71
SVM decision value 0.35
SVM RNA-class probability 0.698468
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21836019 93 + 22407834
UGAAUAAACGGUAGAGGAAAUACUUCUACC-----UGUUUCCGCCCCAUUGAGUGAACACUCAAGCGACUUUUUGCCCUUACUCCAUAUCUAGCUCCC
.....((((((((((((.....))))))))-----.))))..((....((((((....))))))((((....))))................)).... ( -20.80)
>DroSec_CAF1 123379 98 + 1
UGCAUAAACGGUAGAGGAAAUACUUCUACCUCACCUCAUUCCGCUCCAUUGAGUGAACACUCAAACGACUUUUUGCCCUUACUCCACGUCUAGCUCCC
.........((((((((.....))))))))............(((...((((((....))))))..(((..................))).))).... ( -19.47)
>DroSim_CAF1 70654 98 + 1
UGCAUAAACGUUAGAGGAAAUACUUCUACCUCACCUCAUUCCGCUCCAUUGAGUGAACACUCAAACGACUUUUUGCCCUUACUCCACAUCUAGCUCCC
.(((.(((.(((.((((...........))))................((((((....))))))..)))))).)))...................... ( -14.40)
>DroEre_CAF1 84704 89 + 1
UGCAUAAACGGUAGAGGGAAUACUUCUACC-----UGUUUCUCCUCUAUUGAGUGAACACUC-AGCAACUUUUUC-CCUCACUCCAC--CUAGCUCCC
(((..((((((((((((.....))))))))-----.)))).........(((((....))))-))))........-...........--......... ( -21.20)
>DroYak_CAF1 75569 93 + 1
UGCAUAAACGGUAGAGGGAAUUCUAAUACC-----UAUAUUUUUUUCAAUGAGUAGACACUUAAGCGACUUUUUCCCCUUAUUCCAUAGAUAGUUCUC
.........((..(((((............-----..............(((((....)))))...((.....)))))))...))............. (  -9.80)
>consensus
UGCAUAAACGGUAGAGGAAAUACUUCUACC_____UCUUUCCGCUCCAUUGAGUGAACACUCAAGCGACUUUUUGCCCUUACUCCACAUCUAGCUCCC
.((......((((((((.....))))))))..................((((((....))))))............................)).... (-12.12 = -13.00 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:37 2006