Locus 7723

Sequence ID 2L_DroMel_CAF1
Location 21,834,010 – 21,834,116
Length 106
Max. P 0.915132
window12398

overview

Window 8

Location 21,834,010 – 21,834,116
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.81
Mean single sequence MFE -26.86
Consensus MFE -18.38
Energy contribution -18.94
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -1.47
Structure conservation index 0.68
SVM decision value 1.10
SVM RNA-class probability 0.915132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21834010 106 - 22407834
CCAUAUGUUCUGAAAACGGA--------------UGAUACAUAGUAAUUUUUUUCGGUGCAGCUAUCGUUGUCUCCGCUUCGGCUUGGUGACAUUUGCGUCUGCUGCUCCCCCUCAUCAU
...(((((((((....))))--------------....)))))............((.(((((...(((((((.((((....))..)).))))...)))...))))).)).......... ( -30.00)
>DroSec_CAF1 121291 119 - 1
CCAAAUGUCUUGAUAACGGAUAAAUAGCUAUGUAUGAUACCUAGUAAUUUUUUUCGGUGCAGCUAUCGU-GUCUCCGCUUCGGUUUGGUGACAUUUGCGUCGGCUGCUCCCCCUCAUCCU
.................((((((((.((((.(((...))).)))).)))).....((.((((((..(((-(((.((((....))..)).)))....)))..)))))).)).....)))). ( -31.40)
>DroSim_CAF1 68522 119 - 1
CCAUAUGUCUUGAUAACGGAUAAUUAGCUAUGUAUGAUACCUAGUAAUUUUUUUCGGUGCAGCUAUCGU-GUCUCCGCUUCGGUUUGGUGACAUUUGCGUCGGCUGCUCCCCCUCAUCCU
.................((((.....((((.(((...))).))))..........((.((((((..(((-(((.((((....))..)).)))....)))..)))))).)).....)))). ( -30.90)
>DroEre_CAF1 82544 103 - 1
CCAUGUCUUUUGAUAAUAGAUA-----------------GUAAGUCAUUUUUUCCAGUGCAAGUAUCGCUGUCUCCGCCUGGGUUUGGUGACAUUUGCGUCUGCUGCUCCCUCUCAUCAU
...((((....))))...((.(-----------------(..(((.........((((((((((.((((((..(((....)))..)))))).))))))).)))..)))..)).))..... ( -22.40)
>DroYak_CAF1 73719 86 - 1
------------A----GAAUA-----------------UUUUUGCAUUUUCUUAGAUGCAGCUAUCGUUGUCUCCGCUACGGUUU-GUGACAUUUGCGUCUGCUGCUGUCUCUUGUUAU
------------.----.....-----------------...............(((((((((...(((((((.(.((....))..-).))))...)))...))))).))))........ ( -19.60)
>consensus
CCAUAUGUCUUGAUAACGGAUA____________UGAUACCUAGUAAUUUUUUUCGGUGCAGCUAUCGUUGUCUCCGCUUCGGUUUGGUGACAUUUGCGUCUGCUGCUCCCCCUCAUCAU
.......................................................((.(((((...(((.(((.((((....))..)).)))....)))...))))).)).......... (-18.38 = -18.94 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:32 2006