Locus 7722

Sequence ID 2L_DroMel_CAF1
Location 21,833,231 – 21,833,351
Length 120
Max. P 0.995736
window12397

overview

Window 7

Location 21,833,231 – 21,833,351
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -29.76
Consensus MFE -27.18
Energy contribution -27.74
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.98
Structure conservation index 0.91
SVM decision value 2.61
SVM RNA-class probability 0.995736
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21833231 120 + 22407834
GCGAAUGCAACUCGGAAUUAUUUUGAAAGAAAUGAUUUCCAGUUAAUUUAUGUUAAGUGUAGUUAAGUGAAAAUUGUGUUUGAAAAUUAGCCAAACGCAUGGCGUGGUUUAUGCGGCAAC
.(((((((((...(((((((((((....)))))))))))((.(((((((((.....))).)))))).))....))))))))).......((((......))))((.((....)).))... ( -29.70)
>DroSim_CAF1 67587 120 + 1
GCGAAUGCAACUCGGAAUUAUUUUGAAAGAAAUGAUUUCCAGUUAAUUUAUGUUAAGUGUAGUUAAGUGAAAAUUGUGUUUGAAAAUUAGCCAAACGCAUGGCGUGGCUUAUGCGGCAAC
.(((((((((...(((((((((((....)))))))))))((.(((((((((.....))).)))))).))....))))))))).......((((......))))((.((....)).))... ( -31.80)
>DroEre_CAF1 81540 120 + 1
GCGAAUGCAACUCGGAAUUAUUUUGAAGGAAAUGAUUUCCAGUUAAUUUAUGUUAAGUGUAGUUAAGUGAAAAUUGUGUUUGAAAAUUAGCCAAACGCAUGGCGUGGUUUAUGCGGCAAC
.(((((((((...(((((((((((....)))))))))))((.(((((((((.....))).)))))).))....))))))))).......((((......))))((.((....)).))... ( -27.20)
>DroYak_CAF1 72574 120 + 1
GCAAAUGCAACUCGGAAUUAUUUUGAAAGAAAUGAUUUCCAGUUAAUUUAUGUUAAGUGUAGUUAAGUGAAAAUUGUGUUUGAAAAUUAGCCAAACGCAUCGCGUGGUUUAUGCGGCAAC
.....(((((((.(((((((((((....))))))))))).))))............((((((....((((....((((((((.........)))))))))))).....)))))).))).. ( -30.80)
>DroAna_CAF1 71563 120 + 1
CCGAAUGCAAUUCGAAAUUAUUUUUAAAGAAAUGAUUUCCAGUUAAUUUAUGUUAAGUGUAGUUAAGUGAAAAUUGUGUUUGAAAAUUAGCCAAACGCGGGGCGUGGUUUAUGUGGCAAC
.(((((((((((.(((((((((((....)))))))))))((.(((((((((.....))).)))))).))..))))))))))).......((((.((((...))))........))))... ( -29.30)
>consensus
GCGAAUGCAACUCGGAAUUAUUUUGAAAGAAAUGAUUUCCAGUUAAUUUAUGUUAAGUGUAGUUAAGUGAAAAUUGUGUUUGAAAAUUAGCCAAACGCAUGGCGUGGUUUAUGCGGCAAC
.(((((((((...(((((((((((....)))))))))))((.(((((((((.....))).)))))).))....))))))))).......(((..((((...)))).((....)))))... (-27.18 = -27.74 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:31 2006