Locus 7721

Sequence ID 2L_DroMel_CAF1
Location 21,832,880 – 21,832,989
Length 109
Max. P 0.516949
window12396

overview

Window 6

Location 21,832,880 – 21,832,989
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.54
Mean single sequence MFE -32.64
Consensus MFE -23.52
Energy contribution -24.04
Covariance contribution 0.52
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.516949
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21832880 109 - 22407834
UUCGGUCAGGACACAAAUUGCAGGACAAUCAUCAGCGUCGGCGGCAUAG--------AGCGUUGCCCAUUAGCU--GGCGCAACGCAUAAAAUGCACUGCAAAGAGGACCAA-AAGGAUU
...((((.(....)...((((((...........((((((((((((...--------.....)))).....)))--)))))...((((...)))).))))))....))))..-....... ( -35.40)
>DroSim_CAF1 67211 109 - 1
UUCGGUCAGGACACAAAUUGCAGGACAAUCAUCAGCGUCGGCGGCAUUG--------AGCGUUGCCCAUUAGCU--GGCGCAACGCAUAAAAUGCACUGCAAAGAGGACCAA-AAGGAUU
...((((.(....)...(((((((((..........)))....(((((.--------.((((((((((.....)--)).)))))))....))))).))))))....))))..-....... ( -36.00)
>DroEre_CAF1 81257 108 - 1
UUCGGCCAGGACACAAAUUGCAGGACAAUCAUCAGCGUCGGCGGCAGAG--------AGCGUUGCCCAUUAGCU--GGCGCAACGCAUAAAAUGCACUGCAAAGAGGACCAA--AGGAUU
...((((.(....)...((((((...........(((((((((((((..--------....))))).....)))--)))))...((((...)))).))))))...)).))..--...... ( -33.90)
>DroYak_CAF1 72247 109 - 1
UACGGUCAGGACACAAAUUGCAGGACAAUCAUCAUCGUCGGCGGCAGAG--------AGCGUUGCCCAUUAGCU--GGCGCAACGCAUAAAAUGCAUUGCAAAGAGGACCAA-AAGGAUU
...((((.(....)...(((((((((..........)))....(((...--------.((((((((((.....)--)).)))))))......))).))))))....))))..-....... ( -30.80)
>DroAna_CAF1 71220 120 - 1
UUCAGUCAGGACACAAAUUACAGGACAAUCAUCAGGGCGAGCGAGAGAGAGAGAGCGAGCGCUGGCCAUUAGCUCGGGUGCAACGCAUAAAAUGCACUGCAAAAAGGACUAAAAAGGAUA
....(((..(..........)..)))....(((..(((.((((...(........)...)))).))).((((..(...((((..((((...))))..))))....)..))))....))). ( -27.10)
>consensus
UUCGGUCAGGACACAAAUUGCAGGACAAUCAUCAGCGUCGGCGGCAGAG________AGCGUUGCCCAUUAGCU__GGCGCAACGCAUAAAAUGCACUGCAAAGAGGACCAA_AAGGAUU
...((((.(....)...((((((..((........((....))...............(((((((((.........)).)))))))......))..))))))....)))).......... (-23.52 = -24.04 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:30 2006