Locus 7719

Sequence ID 2L_DroMel_CAF1
Location 21,829,345 – 21,829,437
Length 92
Max. P 0.734063
window12393

overview

Window 3

Location 21,829,345 – 21,829,437
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 78.26
Mean single sequence MFE -25.37
Consensus MFE -12.90
Energy contribution -13.57
Covariance contribution 0.67
Combinations/Pair 1.12
Mean z-score -2.76
Structure conservation index 0.51
SVM decision value 0.43
SVM RNA-class probability 0.734063
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21829345 92 + 22407834
GCCAUAUCUGUGCAUGGGCACCAUGGAUCUGGGAUAUCCAUCCCCAUUUGUAUGUAGGCACAUGCAACUUGUUUUGGCCUGCUUGCAUAACU
.((((....((((....)))).))))....(((((....)))))....((((.((((((.((.((.....))..)))))))).))))..... ( -27.60)
>DroEre_CAF1 77744 87 + 1
GCCAUAUUUGAGCAUGGGCAACAUGCAUCUGGGAUAUCCAUCCCCAAAUGC----AUGCACAUGCAACUUGUUCU-GCCUCCUUGCAUAACU
...........(((((.(((...(((((.((((.........)))).))))----)))).))))).....(((.(-((......))).))). ( -25.80)
>DroYak_CAF1 67284 92 + 1
CACCAAUUUGUACAAAGGCAACAUGGAUCUGGAAUAUCCAUCCCCAUGUGUACAUAUGUACAAACAACUUGUUGUGGCCUGCUUAAAUAACU
.....(((((.....((((.((((((...(((.....)))...))))))((((....))))..((((....)))).))))...))))).... ( -22.70)
>consensus
GCCAUAUUUGUGCAUGGGCAACAUGGAUCUGGGAUAUCCAUCCCCAUAUGUA__UAUGCACAUGCAACUUGUUCUGGCCUGCUUGCAUAACU
........((((((.((((...........(((((....))))).............((....))...........))))...))))))... (-12.90 = -13.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:28 2006