Locus 7717

Sequence ID 2L_DroMel_CAF1
Location 21,827,203 – 21,827,303
Length 100
Max. P 0.532386
window12390

overview

Window 0

Location 21,827,203 – 21,827,303
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 95.95
Mean single sequence MFE -31.14
Consensus MFE -28.55
Energy contribution -28.63
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.12
Structure conservation index 0.92
SVM decision value -0.00
SVM RNA-class probability 0.532386
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21827203 100 + 22407834
CAGCCCCAUGUCAGUCAGGCAGAACAAUUGUUCAGGGGCCAGCGAGGCAGCUCCACACAAUGGGUCAUUUAGGCCGGACUCACUCUUGCUCCUGCCUCUU
..(((((.((((.....))))((((....)))).)))))....(((((((.((((.....)))).......(((.(((.....))).))).))))))).. ( -35.80)
>DroSec_CAF1 67727 98 + 1
CAACCCCAUGUCAGUCAGGCAGAACAAUUGUUCAGGGGCCAGCGAGGCAGCU--ACACAAUGGGUCAUUUAGGCCGGACUCACUCUUGCUCCUGCCUCUU
...((((.((((.....))))((((....)))).)))).....(((((((..--.((...((((((..........))))))....))...))))))).. ( -32.40)
>DroSim_CAF1 61334 98 + 1
CAACCCCAUGUCAGUCAGGCAGAACAAUUGUUCAGGGGCCAGCGAGGCAGCU--ACACAAUGGGUCAUUUAGGCCGGACUCACUCUUGCUCCUGCCUCUU
...((((.((((.....))))((((....)))).)))).....(((((((..--.((...((((((..........))))))....))...))))))).. ( -32.40)
>DroEre_CAF1 75611 96 + 1
CAACCCGAUGUCAGUCAGGCAGAACAAUUGUUUAGGGGCCAGCGAGGCAGCU--ACACAAUGGGUCAUUUAGGACGGACUCACUCUUGC-CCUGCCUCU-
...(((..((((.....))))((((....)))).)))......(((((((..--......((((((..........)))))).......-.))))))).- ( -27.79)
>DroYak_CAF1 65362 97 + 1
CAACCCGAUGUCAGUCAGGCAGAACAAUUGUUCAGGGGCCAGCGAGGCAGCU--ACACAAUGGGUCAUUUAGGCCGGACUCACUCUUGCUCCUGUCUCU-
...(((..((((.....))))((((....)))).)))......(((((((..--.((...((((((..........))))))....))...))))))).- ( -27.30)
>consensus
CAACCCCAUGUCAGUCAGGCAGAACAAUUGUUCAGGGGCCAGCGAGGCAGCU__ACACAAUGGGUCAUUUAGGCCGGACUCACUCUUGCUCCUGCCUCUU
...((((.((((.....))))((((....)))).)))).....(((((((..........((((((..........)))))).........))))))).. (-28.55 = -28.63 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:25 2006