| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,826,560 – 21,826,672 |
| Length | 112 |
| Max. P | 0.707477 |
| Location | 21,826,560 – 21,826,672 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.23 |
| Mean single sequence MFE | -27.59 |
| Consensus MFE | -21.85 |
| Energy contribution | -22.10 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21826560 112 - 22407834 CGGAUUUACGGCACAGACAUGAGUCUUACAUCGUAAAUCAGUCAUUAGCUAUCAAUUCCUAUGAUUGAUUUACACAUUGUUUUUGAUCGUUAUUGAUCACAUUGUGUUCGUC-------- .......(((((((((((....))).......(((((((((((((...............)))))))))))))..........((((((....))))))...)))).)))).-------- ( -27.86) >DroSec_CAF1 67106 112 - 1 CGGAUUUACGGCACAGACAUGAGUCUUACAUCGUAAAUCAGUCAUCAGCUAUCAAAUCCUAUGAUUGAUUUACAAAUUGUUUUUGAUCGUUAUUGAUCACAUUGUGUUCGUC-------- .......(((((((((((....))).......(((((((((((((.((..........)))))))))))))))..........((((((....))))))...)))).)))).-------- ( -27.80) >DroSim_CAF1 60713 112 - 1 CGGAUUUACGGCACAGACAUGAGUCUUACAUCGUAAAUCAGUCAUCAGCUAUCAAUUCCUAUGAUUGAUUUACAAAUUGUUUUUGAUCGUUAUUGAUCACAUCGUGUUCGUC-------- ((......))..((..((((((..........(((((((((((((.((..........)))))))))))))))..........((((((....))))))..))))))..)).-------- ( -28.10) >DroEre_CAF1 74965 112 - 1 CGGAUUUACGGCACAGACAUGAGUCUUACAUCGUAAAUCAGUCAUUAGCUAUCAAUUCCUAUGAUUGAUUUACACAUUGGUUUUGAUUGUUAUUGAUCACAUUGCGUUCGUC-------- ..(((((((((...((((....))))....))))))))).((((.((((.(((((..((.(((...........))).))..))))).)))).))))...............-------- ( -27.20) >DroYak_CAF1 64730 112 - 1 CGGAUUUACGGCACAGAUAUGAAACUUACAUCGUAAAUCAGUCAUUAGCUAUCAAUUCCUAUGAUUGAUUUACACAUUGUUUUUGAUCGUUAUUGAUCACAUUGUAUUUGUC-------- ((......))..(((((((..(..........(((((((((((((...............)))))))))))))..........((((((....))))))..)..))))))).-------- ( -27.16) >DroAna_CAF1 64928 120 - 1 GGGAUUUACGGCCCAGACAUGAGUCUUUCGUUGUAAAUCAGUCAUUAGCUAUCAAUUCCUUUGAUUGAUUUACGCAUUGUUUUUGAUCGUUAUUGAUCAUAUUUUUUUUCACUCGUUAUA (((........)))....((((((.....((.((((((((((((.................))))))))))))))........((((((....))))))...........)))))).... ( -27.43) >consensus CGGAUUUACGGCACAGACAUGAGUCUUACAUCGUAAAUCAGUCAUUAGCUAUCAAUUCCUAUGAUUGAUUUACACAUUGUUUUUGAUCGUUAUUGAUCACAUUGUGUUCGUC________ ..(((.((.(((.((....)).))).)).)))(((((((((((((.((..........)))))))))))))))..........((((((....))))))..................... (-21.85 = -22.10 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:24 2006