Locus 7715

Sequence ID 2L_DroMel_CAF1
Location 21,821,632 – 21,821,741
Length 109
Max. P 0.862232
window12388

overview

Window 8

Location 21,821,632 – 21,821,741
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 91.01
Mean single sequence MFE -29.88
Consensus MFE -25.10
Energy contribution -24.97
Covariance contribution -0.14
Combinations/Pair 1.23
Mean z-score -2.20
Structure conservation index 0.84
SVM decision value 0.83
SVM RNA-class probability 0.862232
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21821632 109 - 22407834
CUUUACAAUAUCAGACAUCUUUUCCAGCGGAUCCACAACCAAAUCAUUUUUGCUAUUCCAGUCAGGGAAUUGACCCGCUCGAAAAAUAUUGGCGGCUGCCACAGCGGCA
.....((((((........(((((.(((((.((......((((.....))))..(((((......))))).)).))))).)))))))))))((.((((...)))).)). ( -27.30)
>DroVir_CAF1 82049 109 - 1
CUUGACAAUAUCCGACAUCUUCUCGAGCGGAUCCACAACCAGAUCAUUCUUGCCAUUCCAGUCGGGAAACUGGCCCGCACGAAAUAUGUUGGCAGCCGCCACUGCAGCC
............((((((.((.(((.((((..........(((....)))..........(((((....))))))))).))))).))))))((((......)))).... ( -29.50)
>DroSec_CAF1 62231 109 - 1
CUUUACAAUAUCAGACAUCUUUUCCAGCGGAUCCACAACCAAAUCAUUUUUGCUAUUCCAGUCAGGGAACUGACCCGCUCGAAAAAUAUUGGCAGCUGCCACAGCGGCA
.....((((((........(((((.(((((.........((((.....))))........(((((....)))))))))).)))))))))))...(((((....))))). ( -30.40)
>DroSim_CAF1 55858 109 - 1
CUUUACAAUAUCAGACAUCUUUUCCAGCGGAUCCACAACCAAAUCAUUUUUGCUAUUCCAGUCAGGGAACUGACCCGCUCGAAAAAUAUUGGCAGCUGCCACAGCGGCA
.....((((((........(((((.(((((.........((((.....))))........(((((....)))))))))).)))))))))))...(((((....))))). ( -30.40)
>DroEre_CAF1 70035 109 - 1
CUUUACAAUAUCAGACAUCUUUUCUAGCGGAUCCACUACCAAAUCGUUUUUGCUAUUCCAGUCGGGGAAUUGACCCGCUCGAAAGAUAUUGGCGGCUGCCACAGCGGCA
.....(((((((............(((((((..(...........)..)))))))(((.((.((((.......)))))).))).)))))))((.((((...)))).)). ( -31.70)
>DroYak_CAF1 59517 109 - 1
CUUUACAAUAUCAGACAUCUUUUCUAGCGGAUCCAUUACCAAAUCGUUUUUGCUAUUCCAGUCGGGGAAUUGUCCCGCUCGGAAAAUAUUGGCGGCUGCCACAGCGGCA
.....((((((.............(((((((..((((....))).)..)))))))((((((.(((((.....))))))).)))).))))))((.((((...)))).)). ( -30.00)
>consensus
CUUUACAAUAUCAGACAUCUUUUCCAGCGGAUCCACAACCAAAUCAUUUUUGCUAUUCCAGUCAGGGAACUGACCCGCUCGAAAAAUAUUGGCAGCUGCCACAGCGGCA
.....((((((........(((((.(((((.........((((.....))))........(((((....)))))))))).)))))))))))...(((((....))))). (-25.10 = -24.97 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:23 2006