Locus 7714

Sequence ID 2L_DroMel_CAF1
Location 21,821,158 – 21,821,278
Length 120
Max. P 0.695848
window12387

overview

Window 7

Location 21,821,158 – 21,821,278
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.06
Mean single sequence MFE -60.35
Consensus MFE -49.92
Energy contribution -51.33
Covariance contribution 1.42
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.83
SVM decision value 0.34
SVM RNA-class probability 0.695848
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21821158 120 - 22407834
CCCGCCCCAGCCGCUGCAGCAGCGGCCAAAGGGAAUCCAUACUGCUGAGCGGCUGCUGCCACCAUGUGCAGGUACGCCUCCAUUGAGGGCGGCUGGGAGGGCAGGGACUGCGGAACUGCU
.((..(((((((((.((((((((.((((..((.........))..)).)).))))))))..((..(((.(((....))).)))...))))))))))).))((((...........)))). ( -58.30)
>DroVir_CAF1 81584 114 - 1
CCCGCAGCAGC------AGCUGCCGCCAGCGGAAAGCCAUACUGCUGUGCGGCAGCGGCCACCAUGUGCAGGUAGGCCUCCAUGGAGGACGGCUGGGCGGGCAGCGAUUGCGGCACCGCC
(((((..((((------.((((((((((((((.........)))))).))))))))(.((.(((((.(.(((....))))))))).)).).)))).)))))........(((....))). ( -61.10)
>DroSec_CAF1 61757 120 - 1
CCCGCCCCAGCCGCUGCAGCAGCGGCCAAAGGGAAUCCAUACUGCUGGGCGGCUGCUGCCACCAUGUGCAGGUACGCCUCCAUUGAGGGCGGCUGGGCGGGCAGGGACUGCGGAACUGCC
.((((((.((((((.((((((((.(((...((.........))....))).))))))))..((..(((.(((....))).)))...))))))))))))))((((...........)))). ( -62.60)
>DroSim_CAF1 55384 120 - 1
CCCGCCCCAGCCGCUGCAGCAGCGGCCAAAGGGAAUCCAUACUGCUGGGCGGCUGCUGCCACCAUGUGCAGGUACGCCUCCAUUGAGGGCGGCUGGGCGGGCAGGGACUGCGGAACUGCC
.((((((.((((((.((((((((.(((...((.........))....))).))))))))..((..(((.(((....))).)))...))))))))))))))((((...........)))). ( -62.60)
>DroEre_CAF1 69561 120 - 1
CCCGCACCAGCCGCUGCAGCAGCGGCCAAAGGGAAUCCAUACUGCUGCGCGGCUGCCGCCACCAUGUGCAGGUACGCCUCCAUUGAGGGCGGCUGGGCGGGCAGGGACUGCGGAACUGCC
.((((.((((((((.(((((((.((((....))...))...)))))))))))))((((((..((.(((.(((....))).)))))..)))))).))))))((((...........)))). ( -61.50)
>DroYak_CAF1 59043 120 - 1
CCCGCCCCAGCAGCUGCAGCAGCGGCCAAAGGAAAUCCAUACUGCUGGGCGGCUGCUGCAACCAUGUGCAAGUACGCCUCCAUUGAGGGCGGCUGGGCGGGCAGGGACUGCGGAACUGCC
.((((((.(((.(((((((((((.(((...((....))...(....)))).))))))))).....(((....))).((((....)))))).)))))))))((((...........)))). ( -56.00)
>consensus
CCCGCCCCAGCCGCUGCAGCAGCGGCCAAAGGGAAUCCAUACUGCUGGGCGGCUGCUGCCACCAUGUGCAGGUACGCCUCCAUUGAGGGCGGCUGGGCGGGCAGGGACUGCGGAACUGCC
(((((.((((((((.((((((((.((((..((.........))..)).)).))))))))..((..(((.(((....))).)))...)))))))))))))))........(((....))). (-49.92 = -51.33 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:22 2006