Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,820,189 – 21,820,292 |
Length | 103 |
Max. P | 0.682013 |
Location | 21,820,189 – 21,820,292 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -19.25 |
Consensus MFE | -11.96 |
Energy contribution | -11.77 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -1.89 |
Structure conservation index | 0.62 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21820189 103 - 22407834 UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG--AGCGCCAUAAGGCAAA------CCCGAAUAGAAAAAAUAAAACUCUUGCGC .....((((....(((((.((((...(((........))).)))).((((......))--)).)))))..))))..------..((...(((...........)))..)). ( -16.50) >DroGri_CAF1 66795 89 - 1 AACAAUGGCAACAAUGUGAAACAUAUGUCAACAUUUC-AUUUGUUAUUCAAAUCUAAACCAGGCCCAUAAACCA--------------------AAACACAACUUUGGG-C .(((.((....)).)))..((((.(((.........)-)).)))).................(((((.......--------------------...........))))-) ( -13.07) >DroSec_CAF1 60971 103 - 1 UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG--AGCGCCAUAAGGCAAA------CGCGGAUAGAAAAAAUAAAACUCUCGCGC .....((((....(((((.((((...(((........))).)))).((((......))--)).)))))..))))..------((((((...............)).)))). ( -20.56) >DroSim_CAF1 54598 103 - 1 UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG--AGCGCCAUAAGGCAAA------CGCGGAUAGAAAAAAUAAAACUCUCGCGC .....((((....(((((.((((...(((........))).)))).((((......))--)).)))))..))))..------((((((...............)).)))). ( -20.56) >DroEre_CAF1 68109 101 - 1 UACAAUGCCAUCAAUGGCAAUCAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUUUG--AGCGCCAUAAGGCGAACGCGAACGCGAAUAGCAAAAACAAAAC-------- .....(((((....)))))....................((((((((((........(--..((((....))))..)((....))))))))))))........-------- ( -25.30) >DroYak_CAF1 58016 103 - 1 UACAAUGCCAUCAAUGGCCAAAAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUUUG--AGCGCCAUAAGGCAAA------CGCGAAUAGAAAAAAUAAAACUAUUUCGC .....((((....(((((...((((.(((........))).)))).(((((....)))--)).)))))..))))..------.((((((((...........))).))))) ( -19.50) >consensus UACAAUGCCAUCAAUGGCAAACAUAUGUCAACAUUUCGAUUUGUUAUUCAAAUUUCUG__AGCGCCAUAAGGCAAA______CGCGAAUAGAAAAAAUAAAACUCUCGCGC .....((((....(((((......(((....)))...((((((.....)))))).........)))))..))))..................................... (-11.96 = -11.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:21 2006