Locus 7712

Sequence ID 2L_DroMel_CAF1
Location 21,819,107 – 21,819,214
Length 107
Max. P 0.860539
window12385

overview

Window 5

Location 21,819,107 – 21,819,214
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.75
Mean single sequence MFE -33.56
Consensus MFE -26.98
Energy contribution -27.94
Covariance contribution 0.96
Combinations/Pair 1.11
Mean z-score -1.75
Structure conservation index 0.80
SVM decision value 0.83
SVM RNA-class probability 0.860539
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21819107 107 + 22407834
AUACUAGUCAAGCAAAAUAAUGGAGAAACGAGCCGCUAAAUGGGUUGUUUGCGGGCUCAAUCGCCCCUUGCAAUCUGGAUAGCUAAUUAGCGGUGAGUGAUUGCGCG
....((((((..(.......((......)).((((((((..(((((((..(.((((......)))))..)))))))((....))..)))))))))..)))))).... ( -30.90)
>DroSec_CAF1 59889 107 + 1
AUACUAGUCAAGCAAAAUAAUGGGGAAACGAGCCGCUGAAUGGGUUGUAUGCGGGCUUAAUCGCCCCUUGCAGUCCGGAUAGCUAAUUAGCGGUGAGUGAUUGCGCG
....((((((..(..........(....)..((((((((..((..((((.(.((((......))))).))))..))((....))..)))))))))..)))))).... ( -34.60)
>DroSim_CAF1 53516 107 + 1
AUACUAGUCAAGCAAAAUAAUGGGGAAACGAGCCGCUGAAUGGGUUGUAUGCGGGCUUAAUCGCCCCUUGCAGUCCGGAUAGCUAAUUAGCGGUGAGUGAUUGCGCG
....((((((..(..........(....)..((((((((..((..((((.(.((((......))))).))))..))((....))..)))))))))..)))))).... ( -34.60)
>DroEre_CAF1 67044 107 + 1
AUACUAGUGGCGCAAAAUAAAGGGGAAACGAGCCGCUAAAUGGGUUGUAUGCGGGCUUAAUCGCCCCUUGCAAUCUGGAUAGCUAAUUAGCGGUGAGUGAUUGCGCG
.........((((((........(....)..((((((((..((((((((.(.((((......))))).))))))))((....))..))))))))......)))))). ( -38.30)
>DroYak_CAF1 56968 99 + 1
AUAGUAGUGUAGCAAAAUAAAGGGGAAACGAGC--------GGGUUGUAUGCGGGCUUAAUCGCCCCUUGCAAUCUGGAUAGCUAAUUAGUGGUGAGUGAUUGCACA
.((.((((.((((..........(....)...(--------((((((((.(.((((......))))).)))))))))....)))))))).))(..(....)..)... ( -29.40)
>consensus
AUACUAGUCAAGCAAAAUAAUGGGGAAACGAGCCGCUAAAUGGGUUGUAUGCGGGCUUAAUCGCCCCUUGCAAUCUGGAUAGCUAAUUAGCGGUGAGUGAUUGCGCG
...........((((........(....)..((((((((..((((((((.(.((((......))))).))))))))((....))..))))))))......))))... (-26.98 = -27.94 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:20 2006