Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,807,960 – 21,808,058 |
Length | 98 |
Max. P | 0.546123 |
Location | 21,807,960 – 21,808,058 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.17 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -17.11 |
Energy contribution | -19.05 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.07 |
Mean z-score | -1.48 |
Structure conservation index | 0.71 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21807960 98 + 22407834 CGAUUUGAGGUAGGAAAAUCCCAUUACGAGCUGAUGUAUCACAUGAGCGUUGAAUUUCAGAAACUAU----UAGAUUCCGAAAUAGAAAAUCACUCUCUUCG (((...(((...((......)).....(((((.(((.....))).))).....(((((.(((.(...----..).))).)))))......)).)))...))) ( -17.90) >DroSec_CAF1 50562 98 + 1 CGAUUUGAGGUAGGGAAAUCCCAUUACGAGCUGAUGUAUCACAAGUGCGUUCAAUUUCAGAAACUAU----UAGAUUCUGAAAUAGAAAACUGCUCUCUUCG ......((((..(((....))).....(((((((....)))..(((...(((.(((((((((.(...----..).))))))))).))).))))))).)))). ( -26.10) >DroSim_CAF1 43891 98 + 1 CGAUUUGAGGUAGGGAAUUCCCAUUACGAGCUGAUGUAUCACAAGUGCGUUCAAUUUCAGAAACUAU----UAGAUUCUGAAAUAGAAAACUGCUCUCUUCG ......((((..(((....))).....(((((((....)))..(((...(((.(((((((((.(...----..).))))))))).))).))))))).)))). ( -26.10) >DroEre_CAF1 55101 99 + 1 UGACGUGGGGGAGGGGAACCUCAUUACGAGCUGAUGUAUCACAAGUGCGUUGAAAUUCGGAAAGUAUCAGAUAGAUUCUGAAAUGGGAAACUACUCUCU--- ...(((((..((((....)))).)))))....(((((((.....))))))).......(((.(((.(((((.....)))))...((....))))).)))--- ( -26.70) >consensus CGAUUUGAGGUAGGGAAAUCCCAUUACGAGCUGAUGUAUCACAAGUGCGUUCAAUUUCAGAAACUAU____UAGAUUCUGAAAUAGAAAACUACUCUCUUCG ......((((..(((....))).....((((.(((((((.....)))))))..(((((((((.(((.....))).)))))))))........)))).)))). (-17.11 = -19.05 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:17 2006