Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,196,967 – 2,197,059 |
Length | 92 |
Max. P | 0.591624 |
Location | 2,196,967 – 2,197,059 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 74.62 |
Mean single sequence MFE | -20.25 |
Consensus MFE | -14.14 |
Energy contribution | -14.00 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.11 |
Mean z-score | -0.94 |
Structure conservation index | 0.70 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2196967 92 + 22407834 ---UGUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUAGAGCAGCAA-GUGCAGCAGGUCGAUCU---------AUGCGCC----GU-AA ---..(((((((.....(((((..((((((....(((........)))...)))))).)))))....-.)))))))((.((....---------...))))----..-.. ( -22.40) >DroVir_CAF1 21168 84 + 1 GGGGAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAAUGAACAGCAGGCUGCUG-------------------------- (.((.((((((......(((....((((((....(((........)))...))))))...))).......))))))..)).)..-------------------------- ( -16.82) >DroPse_CAF1 40244 103 + 1 ---AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAACGGACAGCAGGCUGCUUCCACUCUUGAACGCGGC----AUUGC ---..((((((......(((....((((((....(((........)))...))))))...))).......)))))).((((((((.......))).)))))----..... ( -23.92) >DroGri_CAF1 9675 82 + 1 --GCAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAAUGGGCAGCAGGUUGCUG-------------------------- --(((((((((......(((....((((((....(((........)))...))))))...))).......))))))...)))..-------------------------- ( -17.62) >DroAna_CAF1 6371 92 + 1 ---AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUAGAGCAGAAA-GAUUAGCAAGUAAAC-------------GGGCAACAUGU-GG ---.(((((((......((((((.((((((....(((........)))...))))))...((.....-.....))...)))))-------------).)))))))..-.. ( -16.80) >DroPer_CAF1 41602 103 + 1 ---AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAACGGACAGCAGGCUGCUUCCACUCUUGAACGCGGC----AUUGC ---..((((((......(((....((((((....(((........)))...))))))...))).......)))))).((((((((.......))).)))))----..... ( -23.92) >consensus ___AAUGUUGUAAAAAAUGUUUGAACUGUUUUAAGUUUAAGUUUUAACGGUAACAGUGACGCAGAAA_GGACAGCAGGCUGCUG____________GCG_C_____U_G_ .....((((((......(((....((((((....(((........)))...))))))...))).......)))))).................................. (-14.14 = -14.00 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:10 2006