Locus 7709

Sequence ID 2L_DroMel_CAF1
Location 21,807,316 – 21,807,429
Length 113
Max. P 0.531433
window12381

overview

Window 1

Location 21,807,316 – 21,807,429
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.90
Mean single sequence MFE -28.78
Consensus MFE -20.21
Energy contribution -19.52
Covariance contribution -0.69
Combinations/Pair 1.14
Mean z-score -1.06
Structure conservation index 0.70
SVM decision value -0.00
SVM RNA-class probability 0.531433
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21807316 113 + 22407834
CCAGAUGCAUUUGCUCUG------CACAGAUACAAUUUAGAUAAUUUGUAUCUCAACAUUGUUGUCAGGCUGCGAGCGCUGACUGACAGAUGUUUUGAUUUGUG-GGGGCCAAGAACACA
.........((((..((.------(((((((((((..........)))))))((((((((((((((((((.....)).))))).)))).))))..)))..))))-.))..))))...... ( -30.50)
>DroVir_CAF1 62108 104 + 1
CAAGAUGCAUUUGCGCUG------UGCAGAUACAAUUUAGAUAAUUUGUAUCUCAGCGUUGUUGUCAGGACGCGAGCGCUGACUGACAGAUGUUUUGAUUUGUG-GGCC---CA------
..((.(((....)))))(------.((...(((((.(((((..((((((...((((((((..(((....)))..))))))))...))))))..))))).)))))-.)).---).------ ( -29.80)
>DroPse_CAF1 68447 97 + 1
CAAGAUGCAUUUGGCUUGGGCGAGAGCAGAUACAAUUUAGAUAAUUUGUAUCUCAACAUUGUUGUCAGGCUGCGAGCGUUGACUGACAGAUGUUUUG-----------------------
.....(((.(((.((....)).))))))(((((((..........)))))))..((((((..((((((...((....))...))))))))))))...----------------------- ( -25.50)
>DroMoj_CAF1 65291 104 + 1
GAAGAUGCAUUUGCGCUC------UGCAGAUACAAUUUAGAUAAUUUGUAUCUCAGCGUUGUUGUCAGGACGCGAGCGCUGACUGACAGAUGUUUUGAUUUGUG-GGCG---AA------
............((((((------((.((((((((..........))))))))))(((((.(....).)))))))))))((.((.((((((......)))))).-))))---..------ ( -32.20)
>DroAna_CAF1 47657 113 + 1
CAAGAUGCAUUUGCU-AG------CGCAGAUACAAUUUAGAUAAUUUGUAUCUCAACAUUGUUGUCAGGCCGCGAGCGUUGACUGACAGAUGUUUUGAUUUGUGAGGGGGCGAAUACCCA
........(((((((-..------(((((((((((..........)))))))((((((((..(((((((((....).))...)))))))))))..)))..))))....)))))))..... ( -29.20)
>DroPer_CAF1 70357 97 + 1
CAAGAUGCAUUUGGCUUGGGCGAGAGCAGAUACAAUUUAGAUAAUUUGUAUCUCAACAUUGUUGUCAGGCUGCGAGCGUUGACUGACAGAUGUUUUG-----------------------
.....(((.(((.((....)).))))))(((((((..........)))))))..((((((..((((((...((....))...))))))))))))...----------------------- ( -25.50)
>consensus
CAAGAUGCAUUUGCCCUG______AGCAGAUACAAUUUAGAUAAUUUGUAUCUCAACAUUGUUGUCAGGCCGCGAGCGCUGACUGACAGAUGUUUUGAUUUGUG_GG_G___AA______
...........................((((((((..........)))))))).((((((..((((((...((....))...)))))))))))).......................... (-20.21 = -19.52 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:16 2006