| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,806,253 – 21,806,350 |
| Length | 97 |
| Max. P | 0.665086 |
| Location | 21,806,253 – 21,806,350 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.52 |
| Mean single sequence MFE | -35.05 |
| Consensus MFE | -14.42 |
| Energy contribution | -16.37 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21806253 97 - 22407834 UGAUGAAGUGGUUUGCCGACCCACU-UAGGUGGCUAUCUGAAUCUGUGGGUCGGUGA--------------GCGGUGAGCGCUUAGCC-GCAAUCGUCACCAUCCAUCAAUCA (((((.....(((..((((((((((-(((((....))))))....)))))))))..)--------------))((((((((......)-)).....)))))...))))).... ( -41.10) >DroSec_CAF1 48863 97 - 1 UGAUGAAGUGGUUCGUCGACCCACU-UAGGUGGCUAUCUGAAUCUGUGGGUCGGUGA--------------GCGGUGUGCGCUUAGCC-GCAAUCGUCACCAUCCAUCAAUCA (((((.....((((..(((((((((-(((((....))))))....))))))))..))--------------))((((((((......)-))).....))))...))))).... ( -38.40) >DroSim_CAF1 42183 111 - 1 UGAUGAAGUGGUUCGUCGACCCACU-UAGGUGGCUAUCUGAAUCUGUGGGUCGGUGAGCGGUGAGCGGUGAGCGGUGUGCGCUUAGCC-GCAAUCGUCACCAUCCAUCAAUCA (((((.....((((..(((((((((-(((((....))))))....))))))))..))))(((((((((((((((.....)))))).))-)).....)))))...))))).... ( -51.10) >DroEre_CAF1 53017 89 - 1 UGACGAAGUGGUUCCUCGACCCACU-UAGGUGACUAUCUGAAUCGGUGGG-C---------------------GGCGAGCGCUUAGCC-GCAAUCGUCACCAUCCAUCAAUCA ((((((.(((((((((((.((((((-(((....)))........))))))-.---------------------..)))).)...))))-))..)))))).............. ( -30.20) >DroYak_CAF1 42780 84 - 1 UGAUGAAAUGAUUCGUCGACCCACU-UAGUUGGCUAUCUGAAUCUGUGGGUC---------------------AGUGAGCGCUUAGCC-GCAAUC------AUCCAUCAAUCA (((((..((((((....(((((((.-...(..(....)..)....)))))))---------------------.(((.((.....)))-))))))------)).))))).... ( -27.80) >DroAna_CAF1 46855 82 - 1 GGAUCAAGUGGUGCGGCGACCCACUUUAGGUGGCUAUCUGAAUCUG-------------------------------AGCGCCCAGUCGGCAAUCGUCAUCAUCCAUCAAUCA ((((...(.((((((((.(((.......))).))).((.......)-------------------------------)))))))....(((....)))...))))........ ( -21.70) >consensus UGAUGAAGUGGUUCGUCGACCCACU_UAGGUGGCUAUCUGAAUCUGUGGGUC_____________________GGUGAGCGCUUAGCC_GCAAUCGUCACCAUCCAUCAAUCA (((((..(((((.....(((((((..(((((....))))).....)))))))..........................((.....))...........))))).))))).... (-14.42 = -16.37 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:15 2006