Locus 7707

Sequence ID 2L_DroMel_CAF1
Location 21,800,705 – 21,800,796
Length 91
Max. P 0.958108
window12379

overview

Window 9

Location 21,800,705 – 21,800,796
Length 91
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 80.88
Mean single sequence MFE -27.53
Consensus MFE -20.75
Energy contribution -20.50
Covariance contribution -0.25
Combinations/Pair 1.24
Mean z-score -2.19
Structure conservation index 0.75
SVM decision value 1.49
SVM RNA-class probability 0.958108
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21800705 91 - 22407834
AAACAACGAAGUGCAAUGCCGACAGCUUGCACAGAAACGAAUCCGGGCUCAACUGCUGUUGGGUCCAUUGGCAACGACAAUACAGAGU---------CAC
..........((((((.((.....))))))))......((.((.(((((((((....))))))))).(((....))).......)).)---------).. ( -28.00)
>DroSec_CAF1 43403 100 - 1
AAACAACGAAGUGCAAUGCCGACAGUUUGCACAGAAACGACUCCGGACUCAACUGCUGUUGGGUCCAUUAGCAACGACAACACGGAGCUGCGCUAGACAA
.........((((((...(((...((((((...((......)).(((((((((....)))))))))....)))..)))....)))...))))))...... ( -29.50)
>DroSim_CAF1 36120 100 - 1
AAACAACGAAGUGCAAUGCCGACAGCUUGCACAGAAACGACUCCGGACUCAACUGCUGUUGGGUCCAUUAGCAACGACAACACGGAGCUGCGCUAGACAA
..........((((((.((.....))))))))............(((((((((....)))))))))..((((..((......))..)))).......... ( -29.90)
>DroEre_CAF1 47545 83 - 1
AAACAACGAAAUGCAAACUCGACAGCUUGCACAGAAACGAAUGCGGGCUCAACUGCUGUUGGGUCUAUUAGCAAGCAGAGCAC-----------------
.................(((....((((((.((........)).(((((((((....)))))))))....)))))).)))...----------------- ( -22.70)
>consensus
AAACAACGAAGUGCAAUGCCGACAGCUUGCACAGAAACGAAUCCGGACUCAACUGCUGUUGGGUCCAUUAGCAACGACAACACGGAGC_________CAA
..........((((((.((.....))))))))............(((((((((....))))))))).................................. (-20.75 = -20.50 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:14 2006