Locus 7703

Sequence ID 2L_DroMel_CAF1
Location 21,788,666 – 21,788,756
Length 90
Max. P 0.685419
window12373

overview

Window 3

Location 21,788,666 – 21,788,756
Length 90
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 89.97
Mean single sequence MFE -34.40
Consensus MFE -29.90
Energy contribution -30.90
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.87
SVM decision value 0.32
SVM RNA-class probability 0.685419
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21788666 90 - 22407834
GCCGCCCACAGUGUAC-------AGAAGGUGUCCUCCUGGCGGGGAGUGGGAAUCGGAUCGGAUGCAGAAUUGGAUUGGAUUGAGUUGGGUGGCUCA
(((((((((.......-------........(((((((....))))).)).((((.((((.(((.....))).)))).))))..).))))))))... ( -32.30)
>DroSec_CAF1 32489 97 - 1
GCCGCCCACAGUGUACAGCCUUCAGAAGGUGUCCUCCUGGCCGGGAGUGCGAAUCGGAUCGGAUGCAGAAUUGGAUUGGAUUGAGUUGGGUGGCUUA
(((((((((........((((.....))))(..(((((....)))))..).((((.((((.(((.....))).)))).))))..).))))))))... ( -38.00)
>DroSim_CAF1 24834 97 - 1
GCCGCCCACAGUGUACAGCCUUCAGAAGGUGUCCUCCUGGCCGGGAGUGCGAAUCGGAUCGGAUGCAGAAUUGGAUUGGAUUGAGUUGGGUGGCUUA
(((((((((........((((.....))))(..(((((....)))))..).((((.((((.(((.....))).)))).))))..).))))))))... ( -38.00)
>DroEre_CAF1 32806 88 - 1
GCCGCCCACAGUGUGC---------AAGGUGUCCUCCUGGCCGGCAGUGCGAAUCGGAUCGGAUGCGGAAUUGGAUUGGUCUGAGUUGGGUGGCUUA
((((((((((.(((((---------.(((......))).))..))).))....((((((((.((.((....)).))))))))))..))))))))... ( -33.20)
>DroYak_CAF1 23761 88 - 1
GCCGCCCACAGUGUUC---------AAGGUGUCCUCCUGGCCGGGAGUGCGAAUCGGAUCGGAUGCAGAAUUAGAUUGGUUUGAGUUGGGUGGCUUA
((((((((.....(((---------(((.((..(((((....)))))..))...(.((((.(((.....))).)))).))))))).))))))))... ( -30.50)
>consensus
GCCGCCCACAGUGUAC_______AGAAGGUGUCCUCCUGGCCGGGAGUGCGAAUCGGAUCGGAUGCAGAAUUGGAUUGGAUUGAGUUGGGUGGCUUA
(((((((((....................(((.(((((....))))).)))((((.((((.(((.....))).)))).))))..).))))))))... (-29.90 = -30.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:09 2006