Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,770,307 – 21,770,415 |
Length | 108 |
Max. P | 0.623324 |
Location | 21,770,307 – 21,770,415 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -36.47 |
Consensus MFE | -23.94 |
Energy contribution | -25.80 |
Covariance contribution | 1.86 |
Combinations/Pair | 1.17 |
Mean z-score | -2.47 |
Structure conservation index | 0.66 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21770307 108 + 22407834 UUCCAGCCACCUGGGGUAGCAAAGUAUCGCCAGGGGUUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAAUCGGCCUUUAUUUAACCCAUGGUUGGAAACCAC (((((((((..((((...(((((((......(((((......)))))..)))))))...((.((((((....))))))))..........)))))))))))))..... ( -37.10) >DroSec_CAF1 12274 108 + 1 UUCCAGCCACCUGGGGUAGCAAAGUAUCGCAAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGGUUGGAAACCAC ((((((((((...((((.(((((((......(((((......)))))..)))))))...((.((((((....)))))))).........))))))))))))))..... ( -40.30) >DroSim_CAF1 5052 108 + 1 UUCCAGCCACCUGGGGUAGCAAAGUAUCGCCAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGGUUGGAAACCAC ((((((((((...((((.(((((((......(((((......)))))..)))))))...((.((((((....)))))))).........))))))))))))))..... ( -40.30) >DroEre_CAF1 14609 108 + 1 UUCCAGCCACCUGGGGUAGCAAAGCAUGGCCAGGGGCCGACUCUCCUCCACCUUGCCCUGCACGGUUUUGUAAAAUCGCCCCUUAUUUAGCCCGUGGUUGGAAACCAC ((((((((((..(((.(((....(((.(((.(((((..(.....)..)).))).))).))).((((((....))))))........))).)))))))))))))..... ( -39.90) >DroYak_CAF1 577 108 + 1 UUCCAGCCACCUGGGAUAGCAAAGCAUGGCCAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGAUUGGAAACCAC (((((..(((..(((...((((((..(((..(((((......))))))))))))))...((.((((((....))))))))..........))))))..)))))..... ( -35.10) >DroAna_CAF1 11771 108 + 1 CUCCAACCAGGGGGGAUAAAAGAUAGCGGCCAGCGGCAGAUUCACUUCCACUUGUCCCUGGACCGACUCGGAAAAUUCAUCUUCCUUCAAGCCAUGAUCGGAUACUAC ......(((((((.((.........((.....))((.((.....)).))..)).))))))).((((...((((........)))).(((.....)))))))....... ( -26.10) >consensus UUCCAGCCACCUGGGGUAGCAAAGUAUCGCCAGGGGCUGACUCUCCUCCACUUUGCCCUGCACGGUUUUGUAAAACCGGCCCUUAUUUAACCCGUGGUUGGAAACCAC ((((((((((..(((...(((..(((.....(((((......)))))......)))..))).((((((....))))))............)))))))))))))..... (-23.94 = -25.80 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:04 2006