| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,766,991 – 21,767,083 |
| Length | 92 |
| Max. P | 0.602684 |
| Location | 21,766,991 – 21,767,083 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.83 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -12.46 |
| Energy contribution | -12.27 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21766991 92 + 22407834 -----UGUAGUAUCGCACAGGGAUCUCGUAAUCUAUGCGCAAUUAGCGGUGUACAUCAGAUUUAGAGUUCUGAUUGCUUUUGCCUCU--------UCUUUA--------UCUG -----((((.((((((.....(((..((((.....))))..))).)))))))))).(((((..((((....((..((....)).)))--------)))..)--------)))) ( -17.80) >DroGri_CAF1 7606 82 + 1 -----UUUAAUAUCGCUCAUGCAUCUGGUAAUCUAUGCGCAAUUAGCUGCGUACAUCAGAUUUAGUGUUCUGAUUGCAUUC--------------UCUCUG------------ -----.............(((((............((((((......)))))).((((((........)))))))))))..--------------......------------ ( -16.60) >DroEre_CAF1 8718 92 + 1 -----GGUUAUAUCGCGCAUGCAUCUGAUAAUCUAUGCGCAAUUAGCGGUGUACAUCAGAUUUAGAGUUCUGAUUGCUUUUGCCUUU--------UCUUUA--------UCUG -----.((((....(((((((.((......)).)))))))...))))((((((.((((((........)))))))))....)))...--------......--------.... ( -20.40) >DroMoj_CAF1 14684 108 + 1 -----UUUAAUAUCGCUCAUGCAUCUGGUAAUCUAUGCGCAAUUAGCUGCGUACAUCAGAUUUAGUGUUCUGAUUGCCUUUGCCUGCCUCUCUUCUCUCUUACUACCUCUCCC -----.........((....(((...(((((....((((((......))))))..(((((........))))))))))..)))..)).......................... ( -21.30) >DroAna_CAF1 8515 94 + 1 -----UGUAAUAUCGCUCAUGCAUCUGGUAAUCUAUGCGCAAUUAGCGGCGUACAUCAGAUUUAGUAUUCUGAUUGCUUUUGCAUCU----CC--UCUCUA--------UCUC -----.............(((((...(((((..(((((((.....)).)))))..(((((........))))))))))..)))))..----..--......--------.... ( -19.00) >DroPer_CAF1 18685 94 + 1 UCUCUCUUAAUAUCGCUCAUGCAUCUGGUAAUCUAUGCGCAAUUAGCGGCGUACAUCAGAUUUAGUAUUCUGAUUGCCUUCGCCGAG-----------AGA--------UCCC ((((((........(((..(((...(((....)))...)))...)))((((...((((((........))))))......)))))))-----------)))--------.... ( -26.80) >consensus _____UGUAAUAUCGCUCAUGCAUCUGGUAAUCUAUGCGCAAUUAGCGGCGUACAUCAGAUUUAGUGUUCUGAUUGCUUUUGCCUCU________UCUCUA________UCUC ..............((......(((((((....(((((((.....)).))))).)))))))((((....))))..)).................................... (-12.46 = -12.27 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:01 2006