Locus 7695

Sequence ID 2L_DroMel_CAF1
Location 21,757,865 – 21,757,963
Length 98
Max. P 0.819235
window12361

overview

Window 1

Location 21,757,865 – 21,757,963
Length 98
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 78.96
Mean single sequence MFE -30.50
Consensus MFE -18.86
Energy contribution -19.86
Covariance contribution 1.00
Combinations/Pair 1.23
Mean z-score -2.00
Structure conservation index 0.62
SVM decision value 0.67
SVM RNA-class probability 0.819235
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21757865 98 - 22407834
GUGGAUUCCAUCUGGUUGUUGAUGGCCAUUGGCAAGUGUUGUGAGCUGGC-------------------UCUUUCAGCAGUUGUUUUUAGUCCUAACUGAUUGUUGGUGCUAGC-CAA
((((...(((((........)))))))))((((((.(((((.(((....)-------------------))...))))).)).....(((..(((((.....)))))..)))))-)). ( -32.60)
>DroSec_CAF1 10934 99 - 1
GUGGAUUCCAGCUAGUUGUUGAUGGCCAUUGGCAAGUGUUGUGAGCUGGC-------------------UCUUUCAGCAUUUGUUUUUAGUCCUAACUGAUUGUUGGUGCUAGUCUAA
((((....((((.....))))....)))).(((((((((((.(((....)-------------------))...))))))))))).((((..(((((.....)))))..))))..... ( -30.70)
>DroSim_CAF1 11003 99 - 1
GUGGAUUCCAGCUAGUUGUUGAUGGCCAUUGGCAAGUGUUGUGAGCUGGC-------------------UCUUUCAGCAUUUGUUUUUAGUCCUAACUGAUUGUUGGUGCUAGUCUAA
((((....((((.....))))....)))).(((((((((((.(((....)-------------------))...))))))))))).((((..(((((.....)))))..))))..... ( -30.70)
>DroEre_CAF1 10146 112 - 1
GUGGAUUCCAGUUUGUUGCUGAUGGCCAUUGGCAAGUGCUGGGAGCUGGCUCAUUCUGACGCUGUCGCAUUUUUUAGCAUUUCUUUCUUAUUCUAACUGAGUCU------UGGUCUAA
.(((((((((((...((((..((....))..))))..)))))))...((((((....(((...)))((........))...................)))))).------...)))). ( -28.00)
>consensus
GUGGAUUCCAGCUAGUUGUUGAUGGCCAUUGGCAAGUGUUGUGAGCUGGC___________________UCUUUCAGCAUUUGUUUUUAGUCCUAACUGAUUGUUGGUGCUAGUCUAA
((((....((((.....))))....)))).(((((((((((..((.........................))..))))))))))).((((..(((((.....)))))..))))..... (-18.86 = -19.86 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:58 2006