Locus 7693

Sequence ID 2L_DroMel_CAF1
Location 21,755,120 – 21,755,225
Length 105
Max. P 0.611681
window12356

overview

Window 6

Location 21,755,120 – 21,755,225
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.67
Mean single sequence MFE -25.02
Consensus MFE -2.46
Energy contribution -3.30
Covariance contribution 0.84
Combinations/Pair 1.20
Mean z-score -1.68
Structure conservation index 0.10
SVM decision value 0.16
SVM RNA-class probability 0.611681
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21755120 105 - 22407834
-GGUUUC---AUUGGAUGGACGGGGGAAAUAUUUAGAAACU------UAGAUUACAUAUGUAAUAUACGAGUAUCUAACGAU-----UUAUAUGUUUUUCGCUCCGAUGGUAGCCUGAUA
-((((((---((((((..(.((..(((.(((((((((.(((------(..(((((....)))))....)))).)))))....-----..)))).)))..))))))))))).))))..... ( -27.60)
>DroSec_CAF1 8718 98 - 1
-GGUUUC---AUUGGAAGGACGGCGGAAAUCUUUAGAUACU------UAGAUUACAUA-----AAUACGAGUAUCUAACGAU-----UUAU--UUUGUUCGCUCCGCUGAUAGCCUGAUA
-((((((---(.((((.((((((...(((((.(((((((((------(..(((.....-----)))..)))))))))).)))-----))..--.))))))..)))).))).))))..... ( -31.90)
>DroSim_CAF1 8719 104 - 1
-GGUUUC---AUUGGAGGGACGGCGGAAAUCUUUAGAUACUACAUACUACAUUACAUA-----AAUACGAGUAUCUAACGAU-----UUAU--UUUUUUCGCUCCGCUGAUAGCCUGAUA
-((((((---(.(((((.((......(((((.(((((((((.................-----......))))))))).)))-----))..--.....)).))))).))).))))..... ( -28.02)
>DroEre_CAF1 7769 90 - 1
UUGUUUU---GUUGGAUGGAAGACGGCGAUAUUCGGGUACU------UAUACUACAUA-----AAUACAGAU---------------UUGU-UGCUUUCCGCUGCGCUGAUCGCGUGAUG
.......---...((.(((((..((((((...((..(((.(------(((.....)))-----).))).)).---------------))))-))..)))))))((((.....)))).... ( -19.50)
>DroYak_CAF1 9603 106 - 1
UUGUUUUUUGUUUGGAUGGAAGACGGAAAUAUUUGAAUACU------UAGAUUAUAUA-----UAUACAGAUAU--ACCAAUUUUAUUUAC-AGUUUUCCGCUCCGCUGAUCGCCUGAUA
.............(((((((((((((..(((((((.(((..------((.....))..-----))).)))))))--.))((......))..-.)))))))).)))((.....))...... ( -18.10)
>consensus
_GGUUUC___AUUGGAUGGACGGCGGAAAUAUUUAGAUACU______UAGAUUACAUA_____AAUACGAGUAUCUAACGAU_____UUAU__GUUUUUCGCUCCGCUGAUAGCCUGAUA
.................(((..(((((((..................................................................))))))))))............... ( -2.46 =  -3.30 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:53 2006