Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,744,471 – 21,744,573 |
Length | 102 |
Max. P | 0.649354 |
Location | 21,744,471 – 21,744,573 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.85 |
Mean single sequence MFE | -16.97 |
Consensus MFE | -14.30 |
Energy contribution | -14.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.84 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21744471 102 + 22407834 UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUUAAUUCUGACGAAGGCCAAAAACGAGAACGCAAUGUACAUAUGUACAUAAUAUACAUACAUA (((...(((((((.....(((((...(((.((....))))).....))))).)))))))....(....))))((((((....)))))).............. ( -20.90) >DroSec_CAF1 325 78 + 1 UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAAC------------------------ACAUGCAUA ((((..(((((((....((.........))((.(((((......))))).)))))))))....(.....------------------------.).)))).. ( -15.70) >DroSim_CAF1 326 78 + 1 UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAAC------------------------ACAUACAUA ......(((((((....((.........))((.(((((......))))).)))))))))..........------------------------......... ( -14.30) >consensus UGCAAAUUGGCUUAUUAGCGUUACCAAAGCUCUUCGGACUCAAUUCUGAUGAAGGCCAAAAACGAGAAC________________________ACAUACAUA ......(((((((....((.........))((.(((((......))))).)))))))))........................................... (-14.30 = -14.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:53 2006