Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,738,621 – 21,738,741 |
Length | 120 |
Max. P | 0.879031 |
Location | 21,738,621 – 21,738,712 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 81.23 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -18.89 |
Energy contribution | -18.23 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.12 |
Mean z-score | -1.56 |
Structure conservation index | 0.87 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21738621 91 + 22407834 ----------------------GUUUUUAAUUGGACUAUUUGCCAGGUACAUUUAGUUUACACAUUUCAAGACUAUUUUCCGUUUAGGAAAUUUUUGUAU-UGGUACCUUAGUC ----------------------...........(((((..((((((.((((..((((((..........)))))).(((((.....)))))....)))))-)))))...))))) ( -19.60) >DroSec_CAF1 7501 114 + 1 CUGCCGAUGAUAACACGUUAAUGUUUUUGAUUGGACUAUUUGCCAGGUACAUUCAGUUUACACAUUUCAAAACUAUUUUCUGCAUUGGAAAUUUUUGUAUUUGGCUCCUUAGUC ...(((((.(.((((......))))..).)))))((((...((((((((((...(((((..........)))))((((((......))))))...))))))))))....)))). ( -24.90) >DroSim_CAF1 12905 113 + 1 CUGCCGAUGAUAACACGUUAAUGUUUUUGAUUGGACUAUUUGCCAGGUACAUUCAGUUUACACAUUUCAAAACUAUUUUCUGCUUUGGAAAUUUUUGUAU-UGGCUCCUUAGUC ...(((((.(.((((......))))..).)))))((((...(((((.((((...(((((..........)))))((((((......))))))...)))))-))))....)))). ( -20.60) >consensus CUGCCGAUGAUAACACGUUAAUGUUUUUGAUUGGACUAUUUGCCAGGUACAUUCAGUUUACACAUUUCAAAACUAUUUUCUGCUUUGGAAAUUUUUGUAU_UGGCUCCUUAGUC .................................(((((...((((.(((((...(((((..........)))))..(((((.....)))))....))))).))))....))))) (-18.89 = -18.23 + -0.66)
Location | 21,738,637 – 21,738,741 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.36 |
Mean single sequence MFE | -22.37 |
Consensus MFE | -17.77 |
Energy contribution | -18.33 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -2.29 |
Structure conservation index | 0.79 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21738637 104 - 22407834 AGAAACUGCUAUGAAUCUGGCUCACUUAAGACUAAGGUACCA-AUACAAAAAUUUCCUAAACGGAAAAUAGUCUUGAAAUGUGUAAACUAAAUGUACCUGGCAAA ......(((((.(.((.(((..((((((((((((..(((...-.))).....(((((.....))))).)))))))))...)))....))).))...).))))).. ( -19.30) >DroSec_CAF1 7539 105 - 1 AGAAACUGCUAUGUAGCUGGCUUACUUAAGACUAAGGAGCCAAAUACAAAAAUUUCCAAUGCAGAAAAUAGUUUUGAAAUGUGUAAACUGAAUGUACCUGGCAAA ......(((((.(((..((((((.((((....))))))))))..((((...(((((.((.((........)).))))))).)))).........))).))))).. ( -22.30) >DroSim_CAF1 12943 104 - 1 AGAAACUGCUAUGUAGCUGGCUUACUUAAGACUAAGGAGCCA-AUACAAAAAUUUCCAAAGCAGAAAAUAGUUUUGAAAUGUGUAAACUGAAUGUACCUGGCAAA ......(((((.(((..((((((.((((....))))))))))-.((((...(((((.(((((........)))))))))).)))).........))).))))).. ( -25.50) >consensus AGAAACUGCUAUGUAGCUGGCUUACUUAAGACUAAGGAGCCA_AUACAAAAAUUUCCAAAGCAGAAAAUAGUUUUGAAAUGUGUAAACUGAAUGUACCUGGCAAA ......(((((.(((..((((((.((((....))))))))))..((((...(((((....((........))...))))).)))).........))).))))).. (-17.77 = -18.33 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:52 2006