Locus 7690

Sequence ID 2L_DroMel_CAF1
Location 21,733,882 – 21,733,988
Length 106
Max. P 0.861808
window12352

overview

Window 2

Location 21,733,882 – 21,733,988
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.47
Mean single sequence MFE -24.27
Consensus MFE -15.01
Energy contribution -15.07
Covariance contribution 0.06
Combinations/Pair 1.25
Mean z-score -1.89
Structure conservation index 0.62
SVM decision value 0.83
SVM RNA-class probability 0.861808
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21733882 106 - 22407834
ACCGCCUCCACCCUAUAUCGACGAUAUGCGCUUCAUUGAUGACAGCUCCAACUCACAAAGUGAGUCCGAGCGGAACUCUAACAUACACAAAACCAACAAAUAUACU---------
......(((......((((((.((........)).))))))...((((..((((((...))))))..)))))))................................--------- ( -21.40)
>DroGri_CAF1 11101 105 - 1
ACCGUUGACACCUGAUGCGGGUGAGUUGCGCUUCAUUGAUGACAGCUCCAAUUCGCAGAGUGAAUCUGAGCGCAACUCCAUCAGUCAGG-CGACAAC---------CAACAAUAA
...((((.(.((((((...((((((((((((((....(((....((((.........))))..))).)))))))))).)))).))))))-.).))))---------......... ( -39.10)
>DroSec_CAF1 2691 106 - 1
ACCGCUUACACCCGAUAUCGGCGAAAUGCGCUUCAUUGACGACAGCUCCAACUCACAAAGUGAGUCCGAGCGGAACUCUAACAUACACAAAACCAACAAAUGUAAU---------
.((((......(((....)))......))...............((((..((((((...))))))..)))))).................................--------- ( -21.20)
>DroSim_CAF1 8145 106 - 1
ACCGCUUACACCCGAUAUCGGCGAAAUGCGCUUCAUUGACGACAGCUCCAACUCACAAAGUGAGUCCGAGCGGAGCUCUAACAUACACAAAACCAACAAAUGUAAU---------
.....(((((((((....))).)......(((((..((....))((((..((((((...))))))..)))))))))........................))))).--------- ( -24.30)
>DroEre_CAF1 5389 106 - 1
ACCGCUUACACCCGAUACCUGCGAUAUGCGCUUCAUUGACGAUAGCUGCAACUCGCCAAGUGAGUUCGAGCGGAACUCUUUCAUACAAGAAGCCAACAAAAAUAAU---------
.((((((..((.((......((((..((((((((......)).))).)))..))))....)).))..))))))...((((......))))................--------- ( -22.30)
>DroYak_CAF1 10183 106 - 1
ACCCCUAACACCCGAUACGUGCGACAUGCGCUUCAUUGACGACAGCUCCAACUUGCAAAGUGAGUCCGAGCGGAACUCUAUUAUAUACAAAACCAACAAAUAUAAU---------
...........((((...((((.....)))).))..........((((..(((..(...)..)))..))))))......(((((((.............)))))))--------- ( -17.32)
>consensus
ACCGCUUACACCCGAUACCGGCGAAAUGCGCUUCAUUGACGACAGCUCCAACUCACAAAGUGAGUCCGAGCGGAACUCUAACAUACACAAAACCAACAAAUAUAAU_________
.((.........((((...((((.....))))..))))......((((..((((((...))))))..)))))).......................................... (-15.01 = -15.07 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:50 2006