Locus 769

Sequence ID	2L_DroMel_CAF1
Location	2,186,793 – 2,186,904
Length	111
Max. P	0.546068

overview

Window 0

Location	2,186,793 – 2,186,904
Length	111
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	86.88
Mean single sequence MFE	-37.52
Consensus MFE	-32.80
Energy contribution	-32.67
Covariance contribution	-0.12
Combinations/Pair	1.08
Mean z-score	-1.36
Structure conservation index	0.87
SVM decision value	0.02
SVM RNA-class probability	0.546068
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2186793 111 + 22407834
UGCCGGCGGCAGCGUCACGCUUCCUGCAGGAUGCGACAUCGUAGUCAGAUGUCCAAUCCGCCCCGCACUCCCCUCCCCCGCUAG----CAACUGUGGCCAACACGGCAAGAAAGC
(((((((((..(((((..((.....))..)))))((((((.......))))))....)))))...............((((...----.....)))).......))))....... ( -37.50)
>DroSim_CAF1 28462 106 + 1
UGCCGGCGGCAGCGUCACGCUUCCUGCAGGAUGCGACAUCGUAGUCAGAUGUCCAAUCCGCCCCGCACAC-----CCCCGCUCG----CAACUGUGGCCAACACGGCAAGAAAGC
(((((((((..(((((..((.....))..)))))((((((.......))))))....)))))........-----..((((...----.....)))).......))))....... ( -37.50)
>DroEre_CAF1 30977 97 + 1
UGCCGGCGGCAGCGUCACGCUUCCUGCAGGAUGCGACAUCGUAGUCAGAUGUCCAAUGCGCCC--------------CCGCUCU----CAACUGUGGCCAACACGGCAAAAAAGC
(((((((((..((((...((.(((....))).))((((((.......))))))....))))..--------------)))))..----.....(((.....)))))))....... ( -36.60)
>DroYak_CAF1 32017 109 + 1
UGCCGGCGGCAGCGUCACACUUCCUGCAGGAUGCGACAUCGUAGUCAGAUGUCCAAUUCGCCCCGCACUCC------CCGCCCUCACGCAACUGUGGGCAACACGGCGAAAAAGC
.((((((((..(((.......(((....)))((.((((((.......))))))))...))).)))).....------..((((.((......)).))))....))))........ ( -38.50)
>consensus
UGCCGGCGGCAGCGUCACGCUUCCUGCAGGAUGCGACAUCGUAGUCAGAUGUCCAAUCCGCCCCGCACUC_______CCGCUCG____CAACUGUGGCCAACACGGCAAAAAAGC
(((((((((..(((((..((.....))..)))))((((((.......))))))........................)))))...........(((.....)))))))....... (-32.80 = -32.67 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:08 2006