Locus 7689

Sequence ID 2L_DroMel_CAF1
Location 21,729,801 – 21,729,904
Length 103
Max. P 0.922833
window12351

overview

Window 1

Location 21,729,801 – 21,729,904
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -29.37
Consensus MFE -26.12
Energy contribution -26.07
Covariance contribution -0.05
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.89
SVM decision value 1.15
SVM RNA-class probability 0.922833
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21729801 103 + 22407834
GGGCAAAUCUCCGCCGUUGUUGAUGCCACGAUUCAUCGAUAUGAAUUGAUCAACGGUGGGUUUGUCUUUAACCUGUUUAAAACAGAAUUGUAACUUGUAUUAA
((((((((..(((((((((.((....))((((((((....))))))))..))))))))))))))))).....((((.....)))).................. ( -28.90)
>DroPse_CAF1 649 95 + 1
GGGCAAGUCCCCGCCGUUGUUGAUGCCACGAUUCAUCGAGAUGAAUUGCUCAACGGUGGGUUUGUCUUUGACCUAAUGACGACAGAAAGA--------GUCAA
(((((((..((((((((((.....((...(((((((....))))))))).)))))))))))))))))(((((((..((....))...)).--------))))) ( -32.90)
>DroSim_CAF1 626 103 + 1
GGGCAAAUCUCCGCCGUUGUUGAUGCCACGAUUCAUCGAUAUGAAUUGAUCAACGGUGGGUUUGUCUUUAACCUGUUGAAAACAGAAUUGUAGCUUGCAUUGA
..((((...((((((((((.((....))((((((((....))))))))..))))))))))(((((.(((((....))))).)))))........))))..... ( -29.30)
>DroMoj_CAF1 646 99 + 1
GGGCAAAUCACCGCCGUUGUUGAUGCCACGAUUCAUCGAGAUGAAUUGCUCCACGGUGGGUUUGUCUUUGACCUGAAACCGAAA---UG-AGAAUGAAAAUGA
((((((((..(((((((....((.((...(((((((....))))))))))).))))))))))))))).................---..-............. ( -23.70)
>DroAna_CAF1 651 86 + 1
GGGCAAAUCACCGCCGUUGUUGAUGCCACGAUUCAUCGAGAUGAAUUGUUCAACGGUGGGUUUGUCUUUAACCUGC---AACCA--------------AUUAA
((((((((..(((((((((........(((((((((....))))))))).))))))))))))))))).........---.....--------------..... ( -28.50)
>DroPer_CAF1 3824 95 + 1
GGGCAAGUCCCCGCCGUUGUUGAUGCCACGAUUCAUCGAGAUGAAUUGCUCAACGGUGGGUUUGUCUUUGACCUAAUGACGACAGAAAGA--------GUCAA
(((((((..((((((((((.....((...(((((((....))))))))).)))))))))))))))))(((((((..((....))...)).--------))))) ( -32.90)
>consensus
GGGCAAAUCACCGCCGUUGUUGAUGCCACGAUUCAUCGAGAUGAAUUGCUCAACGGUGGGUUUGUCUUUAACCUGAUGAAAACAGAAUG_________AUUAA
(((((((.(.(((((((((.((....))((((((((....))))))))..))))))))))))))))).................................... (-26.12 = -26.07 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:49 2006