Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,672,814 – 21,672,912 |
Length | 98 |
Max. P | 0.760471 |
Location | 21,672,814 – 21,672,912 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -15.17 |
Energy contribution | -16.70 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.67 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21672814 98 + 22407834 U--AACAUCCAACAAAAGUAUAGGAAACUUUAUAUGUGUACCGUCGAAGAGUGCAUAUUUUAGGUUUCGGACAAAAU-------------CCCAAUAAAGAUUUAAUAAGAAU .--....(((.((....))....(((((((...(((((((((......).))))))))...))))))))))..((((-------------(........)))))......... ( -19.60) >DroSec_CAF1 6747 110 + 1 AGUUGGAUUU---GAUUGUAUAUUAAACUUUACAUGUGUACCGUCGCAGAGUGCAUAUUUUAGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAU .(((((((((---.((((.....(((((((...(((((((((......).))))))))...)))))))((((...(((......))))))).))))..)))))))))...... ( -24.50) >DroSim_CAF1 6717 110 + 1 AGUUGGAUUU---GAUUGUAUAUUAAACUCUACAUGUGUACCGACGCAGAGUGCAUAUUUUAGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAU .(((((((((---.((((.....(((((.(((.(((((((((......).))))))))..))))))))((((...(((......))))))).))))..)))))))))...... ( -23.70) >consensus AGUUGGAUUU___GAUUGUAUAUUAAACUUUACAUGUGUACCGUCGCAGAGUGCAUAUUUUAGGUUUAGGUCGAAAUCUAAUUUGAUGACCCCAAUAAAGAUUUAAUAAGAAU .((((((((..............(((((((...(((((((((......).))))))))...)))))))((.....(((......)))....))......))))))))...... (-15.17 = -16.70 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:46 2006