| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,656,379 – 21,656,487 |
| Length | 108 |
| Max. P | 0.937161 |
| Location | 21,656,379 – 21,656,487 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.21 |
| Mean single sequence MFE | -49.20 |
| Consensus MFE | -28.52 |
| Energy contribution | -29.42 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21656379 108 + 22407834 UACGGUAGUGCCCCGAUUCGCGGGAGGGGCAUUCG---GCACUACAGGGAGCUCUAGCUGCUUUCGCGGCUCCACCGGUGACGGUGGAAGAGGGGCAUUGUAGUCAAAUAA .((..(((((((((...(((((..((.(((....(---((.((....)).)))...))).))..))))).(((((((....)))))))...)))))))))..))....... ( -54.00) >DroPse_CAF1 33566 108 + 1 CACGGUGGUGCCGCGAUUCGGUGGCGUGGCAUUCG---AGGCCGUUGGAAGUUCCAGCUGCUUGCGCUGCUCCACCGGAGACGGCGGCAGCGGGGCAUCGUAGUCAAAGAG .((((((((((((((.........)))))))))..---((((.(((((.....))))).))))((.(((((((.(((....))).)).))))).))))))).......... ( -50.10) >DroEre_CAF1 44435 108 + 1 UAUGGUAGUACCCCGAUUCGCGGCAGGGGCAUUCG---CCACUGCCGGAAGCUCUAGCUGCUUUCGCGGCUCCACCGGCGACGGUGGAAGUGGGGCAUCGUAGUCAAAUAA ((((((....((((....((((((((.(((....)---)).)))))((((((.......)))))))))(((((((((....)))))).))))))).))))))......... ( -52.70) >DroWil_CAF1 53530 111 + 1 CACAGUGGUGCCACGAUUGGGUGGCGCUGCAGAAGCAGCCGUUGCUGGCAGUUCCAGUUGCUUGCGUGGCUCCACCGGCGACGGCGGCAACGGAGCGUCGUAAUCAAACAU .((.(..(((((((......)))))))..).((.((.(((((((((((..(..(((((.....)).)))..)..)))))))))))(....)...)).)))).......... ( -48.90) >DroAna_CAF1 33334 102 + 1 CACGGUAGUCCCGCGGUUCGGCGGCGGGGCAUUAG---------CCGGCAGUUCCAAUUGCUUUCGCGGCUCCACAGGCGAUGGCGGAAGCGGAGCAUCGUAGUCGAACAG (.(((.....))).)(((((((.(((((((....)---------))((((((....)))))).)))).(((((.((.....))((....)))))))......))))))).. ( -41.50) >DroPer_CAF1 48565 108 + 1 CACGGUGGUGCCGCGAUUCGGUGGCGUGGCAUUCG---AGGCCGUUGGAAGUUCCAGCUGCUUGCGCUGCUCCACCGGAGACGGCGGCAACGGGGCAUCGUAGUCAAAGAG .((((((.((((((..((((((((.(..((...((---((.(.(((((.....))))).))))).))..).))))))))....))))))......)))))).......... ( -48.00) >consensus CACGGUAGUGCCGCGAUUCGGUGGCGGGGCAUUCG___ACGCUGCUGGAAGUUCCAGCUGCUUGCGCGGCUCCACCGGCGACGGCGGAAGCGGGGCAUCGUAGUCAAACAG .((((((((((((((.........))))))))).................(((((((((((....))))))((.(((....))).))....)))))))))).......... (-28.52 = -29.42 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:39 2006