Locus 7681

Sequence ID 2L_DroMel_CAF1
Location 21,649,099 – 21,649,204
Length 105
Max. P 0.695810
window12337

overview

Window 7

Location 21,649,099 – 21,649,204
Length 105
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 82.14
Mean single sequence MFE -32.70
Consensus MFE -21.09
Energy contribution -21.40
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -2.08
Structure conservation index 0.65
SVM decision value 0.34
SVM RNA-class probability 0.695810
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21649099 105 + 22407834
UAUGUAUGUGUAUUUCUAUG----CAGGCAUCAACCUUGCCAUUAAGGUACUGCAGGCGGGCGCGUGGCCCUUGGGAUCUACUCAAGUUAUACCAUUUGCAGUACCACA
..((((((........))))----))((((.......)))).....(((((((((((.((((.....))))(((((.....))))).........)))))))))))... ( -36.30)
>DroPse_CAF1 27974 109 + 1
AAUGUUUUCCUAUUUCUAUUCGUAUAGGAAUCAAUCUGUCGAUUAAGGUCCUGCAGGCUGGCGCUUGGCCUUUGGGCUCUACGCAGGUUAUACCAUUUGCAGUGCCACA
......(((((((..........)))))))..((((....))))..((..(((((((...(((...((((....))))...))).((.....)).)))))))..))... ( -31.30)
>DroGri_CAF1 45421 105 + 1
AAUGUUUCUUUUUUGUUUUG----CAGGCAUCAAUCUGUCAAUUAAAGUGCUGCAGGCGGGCGCUUGGCCCUUGGGCUCCACACAGGUUAUACCCUUUGCAGUGCCCCA
...........((((.((.(----((((......))))).)).))))(..(((((((.(((.((((((((....)))......)))))....))))))))))..).... ( -28.20)
>DroEre_CAF1 34478 101 + 1
UAUGUA----UAUUUCUAUG----CAGGCAUCAACCUUGCCAUUAAGGUACUGCAGGCGGGCGCUUGGCCUUUGGGGUCUACUCAAGUUAUACCAUUUGCAGUACCACA
..((((----((....))))----))((((.......)))).....(((((((((((.((..((((((((.....))).....)))))....)).)))))))))))... ( -35.60)
>DroYak_CAF1 44700 101 + 1
AAUGUA----UAUUUUUACG----CAGGUAUCAACCUUGCCAUAAAGGUACUGCAGGCGGGCGCUUGGCCUUUGGGGUCUACUCAAGUUAUACCAUUUGCAGUACCACA
...(((----......)))(----(((((....))).)))......(((((((((((.((..((((((((.....))).....)))))....)).)))))))))))... ( -32.60)
>DroPer_CAF1 42953 109 + 1
AAUGUGUUCCUAUUUCUAUUCGUAUAGGAAUCAAUCUGUCGAUUAAGGUCCUGCAGGCUGGCGCUUGGCCUUUGGGCUCUACGCAGGUUAUACCAUUUGCAGUGCCACA
.....((((((((..........)))))))).((((....))))..((..(((((((...(((...((((....))))...))).((.....)).)))))))..))... ( -32.20)
>consensus
AAUGUAU___UAUUUCUAUG____CAGGCAUCAACCUGGCCAUUAAGGUACUGCAGGCGGGCGCUUGGCCUUUGGGCUCUACUCAAGUUAUACCAUUUGCAGUACCACA
.........................(((......))).........(((((((((((.((((.....)))).(((.....((....))....))))))))))))))... (-21.09 = -21.40 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:37 2006