| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,631,338 – 21,631,448 |
| Length | 110 |
| Max. P | 0.570144 |
| Location | 21,631,338 – 21,631,448 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.27 |
| Mean single sequence MFE | -25.99 |
| Consensus MFE | -18.90 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21631338 110 + 22407834 AGAAUUCUCA-UGUAUUAGUUGUUGGAGCUGCCACAAUUCCAAGACAUCAUCAAAAUAAAAACUAUUGGUUCGACAUAUAUGGCUGCCAGUGGGAUAAAUGUGCAAAGGAC .....(((..-(((((...(((((((((.((...)).)))).....................((((((((....((....))...)))))))))))))..)))))..))). ( -20.80) >DroVir_CAF1 37887 107 + 1 ---UCGUUUA-UUAUUCAGCUGCUGGAGCUGCCCCAGUUUCAAGACAUCAUUAAAAUCAAGACUAUUGGUUCGACUUACAUGGCCGCCAGUGGCAUCAAUUUGCAGCGAAA ---.......-...(((.(((((((((((((...))))))))..................(.((((((((....(......)...)))))))))........)))))))). ( -25.80) >DroGri_CAF1 39956 109 + 1 -CCACUCUAA-AUUUCUAGCUGCUGGAAUUGCCACAAUUCCAGGACAUAAUUAAAAUCAAGACCAUUGGAUCCACGUAUAUGGCGGCCAGUGGGAUUAAUUUGCAGCGCAA -.........-.......(((((((((((((...))))))))...........((((.((..(((((((..(((......)))...)))))))..)).))))))))).... ( -32.40) >DroSim_CAF1 38418 110 + 1 GGAAUUCUUA-UUUAUUAGUUGUUGGAGCUGCCCCAAUUCCAAGACAUCAUCAAAAUAAAAACUAUUGGUUCGACAUAUAUGGCUGCCAGUGGGAUAAAUCUGCAGAGGAC ....((((((-((((((.(((.((((((.((...)).)))))))))................((((((((....((....))...))))))))))))))).....))))). ( -20.30) >DroAna_CAF1 21223 109 + 1 UGAAUUCCU--UGUUGUAGUUGCUGGAGCUCCCUCAGUUCCAGGACAUCAUCAAAAUUAAGACAAUUGGCUCAACCUACAUGGCCGCCAGUGGCAUUAAUCUGCAGCGUAA .........--.(((((((...((((((((.....))))))))............(((((....((((((....((.....))..))))))....)))))))))))).... ( -29.80) >DroPer_CAF1 37213 111 + 1 CGACUUCUUUUUGUUUAAGUUAUUGGAACUGCCACAGUUCCAGGAUAUCAUCAAAAUCAAGACGAUUGGCUCGACUUAUAUGGCCGCCAGUGGCAUAAAUCUUCAGCGGAA ((.(((..(((((.........(((((((((...)))))))))........)))))..))).)).((.(((.((........((((....))))........))))).)). ( -26.82) >consensus _GAAUUCUUA_UGUUUUAGUUGCUGGAGCUGCCACAAUUCCAAGACAUCAUCAAAAUCAAGACUAUUGGUUCGACAUAUAUGGCCGCCAGUGGCAUAAAUCUGCAGCGGAA ..................(((((((((((((...))))))))....................((((((((....(......)...)))))))).........))))).... (-18.90 = -19.27 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:36 2006