Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,184,972 – 2,185,072 |
Length | 100 |
Max. P | 0.995970 |
Location | 2,184,972 – 2,185,072 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.39 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -16.72 |
Energy contribution | -18.22 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.13 |
Mean z-score | -2.37 |
Structure conservation index | 0.61 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2184972 100 - 22407834 CAGAUCGCGGGACAGGUU------------ACCAUUACCAUUACCAUCUUGUGC-GCCGUCUU-------CUUUAGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCUUCUCGUCUUUCA ..((..((((((((((((------------....................((((-(((((...-------.....)))))))))....((...)).))))))......))))))...)). ( -28.80) >DroEre_CAF1 29127 112 - 1 CAGAUCGCGGGACAGGUUAGCAUUACCAUUACCAUUACCAUUACCAUCUUGUGC-GCCGUCUU-------CUUUGGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCUUCUCGUCUUUCA ..((..((((((((((((.(((................((.........))(((-((((((..-------....))))))))).........))).))))))......))))))...)). ( -33.60) >DroYak_CAF1 29951 119 - 1 CAGAUCGCGGGACAGGUUAGCAUUACCAUUACCAUUACCAUUACCAUCUUGUGC-GCCGUCUUCUUUCUUCUUUGGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCCUCUCGUCUUUCA ..((..((((((((((((.(((................((.........))(((-((((((.............))))))))).........))).))))))......))))))...)). ( -32.22) >DroAna_CAF1 30103 84 - 1 CGGGUCUUCAGACAGGUU------------------------GCCAUCUUGUAGAUGCAUCUU-------C-----CAAGGCAUUACCGCAUUGCAAACCUGAAUUCUUCAAGUUUUUCA .(((.(((.(((((((((------------------------((...((((.(((....))).-------.-----))))((......))...)).))))))...)))..)))...))). ( -15.30) >consensus CAGAUCGCGGGACAGGUU____________ACCAUUACCAUUACCAUCUUGUGC_GCCGUCUU_______CUUUGGCGGCGCAUUACCGCAUUGCAAACCUGAAUUCUUCUCGUCUUUCA ..((..((((((((((((.....................................((((((.............))))))(((.........))).))))))......))))))...)). (-16.72 = -18.22 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006