Locus 7678

Sequence ID 2L_DroMel_CAF1
Location 21,622,423 – 21,622,543
Length 120
Max. P 0.664998
window12333

overview

Window 3

Location 21,622,423 – 21,622,543
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.22
Mean single sequence MFE -38.43
Consensus MFE -21.08
Energy contribution -21.30
Covariance contribution 0.22
Combinations/Pair 1.53
Mean z-score -1.82
Structure conservation index 0.55
SVM decision value 0.28
SVM RNA-class probability 0.664998
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21622423 120 - 22407834
CCCAUAAAGUAGUACAAAAGGCCUAUCAGCGCUGCCGUGGCUAUCAAAACUGCAUUAGCCGCUAAUUGGUUCGAGAGCAGCGAGUCCCAGUGAGAAUAACCAACAGGGAGACUGAGGCAA
....................(((..((((((((((((((((((............)))))))...(((...)))).))))))..((((..((........))...))))..))))))).. ( -32.60)
>DroVir_CAF1 31899 120 - 1
CCCAUGAAGUAAUACAAUAGACCAAUUAAAGCUGCGGUGGCUAUUAAAACCGCAUUAGCCGCCGCCUGAUCUGAGAUUAACGGAUCCGGCCGUGAAAAGCCUACGGGCAGACUCAGGCAA
..............................((.((((((((((............)))))))))).....(((((....((((......)))).....(((....)))...))))))).. ( -38.90)
>DroGri_CAF1 33575 120 - 1
CCCAUAAAGUAAUACAAUAGGCCAAUUAACGCCGCGGUCGCUAUCAAAACCGCAUUAGCCGCCGCCUGAUCGGAGAUUAACCGAUCCGGCCGUGAGAAGCCCACCGGCAGACUCAGGCAA
...................(((........)))(((((..........)))))....(((((.(((.((((((.......)))))).))).))(((..(((....)))...))).))).. ( -38.40)
>DroMoj_CAF1 20714 120 - 1
CCCAUAAAGUAAUAUAAUAGUCCAAUUAACGCUGCGGUGGCUAUUAAAACGGCAUUAGCCGCCGCCUGAUCUGAGAUUAAGGGAUCUGGACGUGAGAAGCCAACGGGUAGACUCAAGCAA
........((.........(((((.........((((((((((............))))))))))..(((((.........)))))))))).((((..(((....)))...)))).)).. ( -35.10)
>DroAna_CAF1 16090 120 - 1
CCCAUAAAGUAGUACAGGAGUCCGAUGAGGGCGGCGGUGGCUAUAAGGACAGCAUUGGCCGCCACCUGAUUGGAGAGCAUUGGAUCCUGGCGAGAGUAAGCCACGGGCAGACUAAGGCAU
..............(((((.(((((((..((((((.(..(((........)))..).)))))).((.....))....))))))))))))((...(((..(((...)))..)))...)).. ( -43.30)
>DroPer_CAF1 32309 120 - 1
CCCAUAAAGUAAUACAGUAGACCGAUCAAGGCGGCGGUGGCUAUCAGAACUGCAUUGGCCGCCGCCUGAUCCGAGAUGAGAGGAUCAGGACGAGAGAAGCCAACGGGGAGGCUCAGGCAA
(((................(.((......)))(((((((((((.((....))...))))))))(((((((((.........)))))))).).......)))...)))...((....)).. ( -42.30)
>consensus
CCCAUAAAGUAAUACAAUAGACCAAUUAACGCUGCGGUGGCUAUCAAAACCGCAUUAGCCGCCGCCUGAUCCGAGAUUAACGGAUCCGGACGAGAGAAGCCAACGGGCAGACUCAGGCAA
..............................(((((((((((((............))))))))))..((((((.......)))))).............................))).. (-21.08 = -21.30 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:33 2006