Locus 7677

Sequence ID 2L_DroMel_CAF1
Location 21,616,302 – 21,616,402
Length 100
Max. P 0.977385
window12332

overview

Window 2

Location 21,616,302 – 21,616,402
Length 100
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 72.08
Mean single sequence MFE -23.49
Consensus MFE -10.15
Energy contribution -9.35
Covariance contribution -0.80
Combinations/Pair 1.31
Mean z-score -2.36
Structure conservation index 0.43
SVM decision value 1.79
SVM RNA-class probability 0.977385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21616302 100 + 22407834
AA--UGAAAAGCGAGACCCGUUUAAACUAAAACGAACAAAGAUAGAAAUAAAAACCAGUUUUAAUGGGAUU---AA--UGAC--AAUAUAGUCGUUUCUCUCGCACUCA
..--......((((((((((((.(((((....(.......).((....))......))))).))))))...---((--((((--......))))))..))))))..... ( -23.70)
>DroPse_CAF1 10445 99 + 1
AG--UAAAAAGCGCGACUUGUUUGAAAUAAAACGAACGAA------AAAAAAAACUGGUUUUUAUGCGGCGCGCACACAAGU--CAUACAUCCGUCUCGCUUGCGCGCA
..--.......((((..(((((((........))))))).------...(((((....))))).))))(((((((..(.((.--(........).)).)..))))))). ( -23.90)
>DroEre_CAF1 10617 97 + 1
AA--UGAAAAGCGAGACCCGUUUAAAUUAAAACGAACAAAGAGAGAAA---AAACCAGUUUUCAGGCGACU---AA--UGAC--AAUAUAGUCGUUUCUCUCGCACGCA
..--......(((.....(((((......)))))......((((((((---...((........))(((((---((--(...--.)).))))))))))))))...))). ( -23.90)
>DroYak_CAF1 10568 98 + 1
AA--UGAAAAGCGAGACCCGUUUAAACUAAAACGAACAAAGAGAGAAA--AAAACCAGUUUUUAUGCGACU---AA--UGUC--CAUAUAGUCGUUUCUCUCGCACGCA
..--......(((.....(((((......)))))......((((((((--((((....)))))..((((((---(.--....--....))))))))))))))...))). ( -24.30)
>DroAna_CAF1 8940 105 + 1
AAAGUAAAAAGCGCGACUUGUUUGAAAUUAAACGAACCCGAACGAAGAGAAAAACUGGUUUUUAUGCGGCU---ACA-UAACCCCCAAUAGUCGUCUCGCUUGCACACG
...((...(((((.((((((((((..............)))))))...((.....(((...(((((.....---.))-)))...)))....))))).)))))..))... ( -20.24)
>DroPer_CAF1 25427 98 + 1
AG--UAAAAAGCGCGACUUGUUUGAAAUAAAACGAACGAA------AA-AAAAACUGGUUUUUAUGCGGCGCGCACACAAGC--CAUACAUCCGUCUCGCUUGCGCGCA
.(--(...(((((.((((((((((........))))))).------..-......((((((.(.((((...)))).).))))--)).......))).)))))..))... ( -24.90)
>consensus
AA__UAAAAAGCGAGACCCGUUUAAAAUAAAACGAACAAAGA_AGAAA_AAAAACCAGUUUUUAUGCGACU___AA__UAAC__CAUAUAGUCGUCUCGCUCGCACGCA
..........((((((..(((((......)))))...............................(((((....................))))).))))..))..... (-10.15 =  -9.35 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:32 2006