| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,615,306 – 21,615,399 |
| Length | 93 |
| Max. P | 0.853301 |
| Location | 21,615,306 – 21,615,399 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.88 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -17.49 |
| Energy contribution | -17.22 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21615306 93 + 22407834 AGCCUCAUCCACCUUCCGCUUUACAGCCUCAAUGGCGGGAGCAUCUGUAAGGCGAUAAUAAAAAUUGAACAAUA---AGAACA-----UGAACGUGGAAAA .......(((((.(((((((((((((((.....)))(....)...))))))))).((((....)))).......---......-----.))).)))))... ( -24.00) >DroSec_CAF1 73576 93 + 1 AGGCUCAUCCACCUUCCGCUUUACAGCCUCAAUGGCGGAAGCGUCUGUAAGGCGAUAAAAAAAAAGGAAUAAUA---AGAACA-----UGAACGUGGAAAA .......(((((.(((((((((((((((.....)((....))).))))))))))...........(........---....).-----.))).)))))... ( -23.90) >DroSim_CAF1 12711 91 + 1 AGCCUCAUCCACCUUCCGCUUUACAGCCUCAAUGGCGGAAGCGUCUGUAAGGCGAUAAAA--AAAGGAAUAAUA---AGAACA-----UGAACGUGGAAAA .......(((((.(((((((((((((((.....)((....))).))))))))))......--...(........---....).-----.))).)))))... ( -23.90) >DroEre_CAF1 9665 92 + 1 AGCCUCAUCCACCUUCCGCUUUACAGCCUCAAUGGCGGGAGCGUCUGUAGGACCGUAAUAAAAAAGGAAUAAUA---AGAACC-----UAAACGUGGAA-A .......(((((.(((((((((...(((.....))).)))))(((.....)))............)))).....---.(....-----....)))))).-. ( -21.70) >DroWil_CAF1 16439 93 + 1 GGCCUCAUCAACCUUUCGCUUUACAGCUUCAGCGGCGGGGGCAUCUAAAGGUUGGCGGA---AAAGCAAAAAUUGAAAGAGAA-----UUCAAGUUAAUUA ...(((..((((((((.(((((...(((.....))).)))))....))))))))((...---...))...........)))..-----............. ( -20.20) >DroYak_CAF1 9530 96 + 1 AGCCUCAUCCACCUUCCGCUUUACAGCCUCAAUGGCGGGAGCGUCUGUAGGGCCAGAGUAA-AAAGGAAUAAUG---AGAACGUACCGUAAGCGUGGAA-A ...(((((...((((.((((((...(((.....))).))))))((((......))))....-.))))....)))---)).((((.......))))....-. ( -24.70) >consensus AGCCUCAUCCACCUUCCGCUUUACAGCCUCAAUGGCGGGAGCGUCUGUAAGGCGAUAAAAA_AAAGGAAUAAUA___AGAACA_____UGAACGUGGAAAA .......(((((((((((((.............))))))))((((.....)))).......................................)))))... (-17.49 = -17.22 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:31 2006