Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,611,207 – 21,611,321 |
Length | 114 |
Max. P | 0.965842 |
Location | 21,611,207 – 21,611,321 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -39.52 |
Consensus MFE | -31.16 |
Energy contribution | -32.44 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.21 |
Mean z-score | -2.32 |
Structure conservation index | 0.79 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21611207 114 - 22407834 AUCGAGUAAGAGAGAGCCGAAUAUCGACUCGACUCUCGCAGCUACUGCUU-CACCAAAACUGAGCUUUUCUCCAUGGCGCCGCCGAUCAAAGGCGGCGAGUGC---UAAGUAGUCGAA .(((((..((((.(((.((.....)).)))..))))..)..((((((((.-((.......))))).........(((((((((((........))))).))))---))))))))))). ( -39.30) >DroSec_CAF1 70354 114 - 1 AACGAGUAGGAGAGAGCCGAAUUUCGACUCGGCUCUCGCUGCUACUGCUU-CACCAAAACUGAGCUUUUCUCCAUGGCGCCGUCGAUCAAAGGCGGCGAGUGC---UAAGUAGUCGAA ..(((((((..(((((((((........))))))))).)))))(((((((-((((........(((.........)))((((((.......))))))).))).---.))))))))).. ( -45.20) >DroSim_CAF1 9378 114 - 1 AACGAGUAGGAGAGAGCCGAAUUUCGACUCGGCUCUCGCUGCUACUGCUU-CACCAAAACUGAGCUUUUCUCCAUGGCGCCGUCGAUCAAAGGCGGCGAGUGC---UAAGUAGUCGAA ..(((((((..(((((((((........))))))))).)))))(((((((-((((........(((.........)))((((((.......))))))).))).---.))))))))).. ( -45.20) >DroEre_CAF1 6612 105 - 1 ---GAAUAGAAGAGAGU-------CAAAUUUACACUCGCUGCUACUGCUCCCACCAAUACUGAGCUUUUUUCUAUGGCGCCGCCGAUCAACGUCGGCGAGUGC---UAAGCAGUCGAA ---..............-------...........((((((((...((((...........)))).........(((((((((((((....))))))).))))---))))))).))). ( -34.00) >DroYak_CAF1 5516 115 - 1 ---UAGUAGAAGAGAGUUUGAUUUCCAAUUUGCUCUCGCUGCUACUGCUCCCACCAAUACUGAGAAUUCUUCCAUGGCGCCGCCGAUCAAAGGGGGCGAGUGCUUCUAAGUAGUCGAA ---((((((..(((((((((.....)))...)))))).))))))..((((((.........(((....)))...((((...))))......))))))((.((((....)))).))... ( -33.90) >consensus A_CGAGUAGGAGAGAGCCGAAUUUCGACUCGGCUCUCGCUGCUACUGCUU_CACCAAAACUGAGCUUUUCUCCAUGGCGCCGCCGAUCAAAGGCGGCGAGUGC___UAAGUAGUCGAA ....(((((..(((((((((........))))))))).)))))((((((............(((.....)))(((..(((((((.......))))))).)))......)))))).... (-31.16 = -32.44 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:29 2006