| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,604,957 – 21,605,060 |
| Length | 103 |
| Max. P | 0.694731 |
| Location | 21,604,957 – 21,605,060 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -22.41 |
| Energy contribution | -23.38 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21604957 103 + 22407834 ACGGACUCGGUAAUCAUGCUCUCCAGGGCGUGAUCACCAUGGGUCUGACCAUAUAUUCGCAGAAGGACCUGUGGGUGUAUAUCAAGGAUUAGCUUUCAAAGAG .((((((((((.(((((((((....))))))))).)))..)))))))...((((((((((((......)))))))))))).....(((......)))...... ( -39.10) >DroSec_CAF1 57758 103 + 1 ACGGACUCGGUAAUCAUGCUCUCCAGCGCGUGAUCACCAUGGGUCUGACCAUAGAUUCGCAGAAGGACCUGUUGGUAUAUAUCAAGGAUGAACUUCUAAAAAG .((((((((((.(((((((.(....).))))))).)))..)))))))(((((((.(((......))).))).)))).........(((......)))...... ( -30.30) >DroSim_CAF1 3664 103 + 1 ACGGACUCGGUAAUCAUGCUCUCCAGCGCGUGAUCACCAUGGGUCUGACCAUAGAUUCGCAGAAGGACCUGUUGGUAUAUAUCAAGGAUGAACUUCUAAAAAG .((((((((((.(((((((.(....).))))))).)))..)))))))(((((((.(((......))).))).)))).........(((......)))...... ( -30.30) >DroWil_CAF1 2469 97 + 1 ACCGAUUCGGUGAUCAUACUCUCCAGCGCAUGAUCGCCAUGUGUCUGACCGUAAAUACGCAGUAGAACCUGUUUUUUGUUAU------UUUGUUUUUAAAAAC ...(.((((((((((((.(.(....).).))))))))).(((((.(........).)))))...))).).............------............... ( -17.20) >DroYak_CAF1 1937 103 + 1 ACGGACUCGGUAAUCAUGCUCUCCAGCGCGUGAUCGCCAUGGGUCUGACCAUAAAUUCGCAGUAGGACCUGUGGGUGUUUAUCAAGGAAGAACUUGUGAAGAG .(((((((((..(((((((.(....).)))))))..))..))))))).......((((((((......)))))))).((((.((((......))))))))... ( -35.00) >DroPer_CAF1 16433 103 + 1 ACCGAUUCGGUAAUCAUGCUCUCCAGCGCAUGAUCUCCAUGGGUUUGGCCAUAGAUACGCAGCAGGACCUGCAAAACGAUGCAAACGAUUAGACAUUCAAGAG ..((....((..(((((((.(....).)))))))..))..(((((..((............))..)))))(((......)))...))................ ( -22.40) >consensus ACGGACUCGGUAAUCAUGCUCUCCAGCGCGUGAUCACCAUGGGUCUGACCAUAGAUUCGCAGAAGGACCUGUUGGUAUAUAUCAAGGAUGAACUUUUAAAAAG .((((((((((.(((((((.(....).))))))).)))..)))))))...(((((((.((((......)))).)))))))....................... (-22.41 = -23.38 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:28 2006