Locus 7672

Sequence ID 2L_DroMel_CAF1
Location 21,561,078 – 21,561,183
Length 105
Max. P 0.507679
window12326

overview

Window 6

Location 21,561,078 – 21,561,183
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 69.02
Mean single sequence MFE -24.75
Consensus MFE -9.65
Energy contribution -9.63
Covariance contribution -0.03
Combinations/Pair 1.19
Mean z-score -1.68
Structure conservation index 0.39
SVM decision value -0.05
SVM RNA-class probability 0.507679
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21561078 105 + 22407834
CCA---UUCAAUAUGUUCGCCAACAAAUUGUUGACCUGCUCGGCAUUACUAAUAAUGUUAUUUUUACUAAGCAGUACAGGUUAGU--------GCCAAGCCAAUUA-AACCCUUUUU---
.((---..((((.((((....)))).)))).))....(((.(((((((((.....((((..........)))).....)).))))--------))).)))......-..........--- ( -17.80)
>DroPse_CAF1 82155 106 + 1
ACAAGUUGCAAUAUGUUUGCCCACAAAUUAGUG--CUGCUAGGCAC-------AACAUUGCUAUUGCUGAGCAGCGCAGGUGAGU--GCAAAA--GAAACUACUUG-AACCCGAACCCAU
.(((((.........(((((((((......(((--(((((.((((.-------...........)))).))))))))..))).).--))))).--......)))))-............. ( -29.09)
>DroSim_CAF1 141530 103 + 1
CCA---UCCAAUAUGUUCGCCAACAAAUUGUUGACCUGCUCGGCAUUACUAAUAAUGUUAUUAUUACUGAGCAACACAGGUGAGU-----------AAGCAUAUUACAACCCUUUUU---
...---...((((((((..(((((.....))))(((((....((.(((.(((((((...))))))).)))))....)))))..).-----------.))))))))............--- ( -22.60)
>DroEre_CAF1 197049 110 + 1
CUG---AUCAAUAUGUUCGCCAGCAAAUUGUUGACCUGCUCGGCGUUACUAAUAAUAU---UAUUGCUAAGCAAUGCAGGUGAGUAAGCAUAUGACAAGCUACGUA-AACCGUUUUU---
((.---.(((.((((((..(((((.....))))((((((...((.(((.(((((....---))))).)))))...))))))..)..)))))))))..)).......-..........--- ( -25.80)
>DroYak_CAF1 170077 115 + 1
CCA---AUCAAAAUGUUCACCAACAAAUUGUUGACCUGCUCGGCGUUACUAAUAAUAUUAUUAUUGCUAAGCAAUGCAGGUGAGUAAGCAUAUGAAAAGCUACGUA-AACCGUUUUUUU-
...---......(((((.((((((.....))))((((((...((.(((.(((((((...))))))).)))))...))))))..)).)))))..(((((((......-....))))))).- ( -24.10)
>DroPer_CAF1 80812 106 + 1
ACAAGUUGCAAUAUGUUUGCCCACAAAUUAGUG--CUGCUAGGCAC-------AACAUUGCUAUUGCUGAGCAGCGCAGGUGAGU--GCAAAA--GAAACUACUUG-AACCCGAACCCAA
.(((((.........(((((((((......(((--(((((.((((.-------...........)))).))))))))..))).).--))))).--......)))))-............. ( -29.09)
>consensus
CCA___UUCAAUAUGUUCGCCAACAAAUUGUUGACCUGCUCGGCAUUACUAAUAAUAUUAUUAUUGCUAAGCAACGCAGGUGAGU__GCA_A___CAAGCUACUUA_AACCCUUUUU___
...............((((((..((......))...((((.((((...................)))).)))).....)))))).................................... ( -9.65 =  -9.63 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:27 2006