Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,490,859 – 21,490,979 |
Length | 120 |
Max. P | 0.514756 |
Location | 21,490,859 – 21,490,979 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -24.14 |
Consensus MFE | -20.96 |
Energy contribution | -21.63 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.87 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21490859 120 + 22407834 UUUUUCUUGUCGGUCUUGGUGAUGUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGAGGCAUUGUUCACGUUACUUAUAUUUUCACAAACACAAUUCACUUA ......((((.((....((((((((......((((..((((((((.....)))).....(((..........)))))))..)))))))))))).......)))))).............. ( -25.50) >DroEre_CAF1 172361 120 + 1 UUUUUCUUGUCGGUCUUGGUGAUGUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGCGGCAUUAUUCACUUCACUUAUAAUUUCACAAACACAAUUCACUUA ......((((.(((...(((((.((((....))))..((((((((.....))))(((...............)))))))....)))))..))).))))...................... ( -25.36) >DroYak_CAF1 159814 120 + 1 UUUUUCUUGUCGGUCUUGGUGAUAUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGCGGCAUUAUUCACUUUACUUAUAUUUUCACAAACACAAUUCACUUA .......(((.(((...(((((..(((....)))...((((((((.....))))(((...............)))))))....)))))..))).)))....................... ( -21.56) >consensus UUUUUCUUGUCGGUCUUGGUGAUGUUCUUCUGAGCCUUGCCAGCCUUCUUGGCUGCCUUUCCACUAGUUUUCGGCGGCAUUAUUCACUUUACUUAUAUUUUCACAAACACAAUUCACUUA ......((((.(((..(((..(.((((....)))).)..))))))......((((((...............))))))........................)))).............. (-20.96 = -21.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:24 2006