Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,372,335 – 21,372,439 |
Length | 104 |
Max. P | 0.500000 |
Location | 21,372,335 – 21,372,439 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -21.27 |
Consensus MFE | -17.69 |
Energy contribution | -19.26 |
Covariance contribution | 1.57 |
Combinations/Pair | 1.15 |
Mean z-score | -1.45 |
Structure conservation index | 0.83 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21372335 104 + 22407834 UACAUAUUAUUUGAAAAAAGGGUUCUGGAUUCUAUAUUCUUUUUCAUUGUGAUGUUCUCUGUACUAAGUGUUUCGCA--------CAAUAUUCCAGAUAGAAAGAAAUACAA ...(((((((.(((((((.((((...(....)...)))))))))))..)))))))............(((((((...--------...((((...))))....))))))).. ( -14.70) >DroSec_CAF1 84189 108 + 1 UACAUGUUAUUUAGAAGAAGAGUUCUGGAUUCUAGAUUCUUUUUCAUUGUAAUGUUCUCUGUACUAAGUGUUCCGCACAUUGGAACAAUACUCCAGACAGAAA----UAUAU ...(((((((...((((((((((.((((...))))))))))))))...)))))))..(((((......(((((((.....))))))).........)))))..----..... ( -27.16) >DroSim_CAF1 70930 108 + 1 UACAUAUUAUUUAGAAAAAUAGUUCUGGAUUCUAGAUUCUUUUUCAUUGUAAUGUUCUCUGUACUAAGUGUUCCGCACAUUGGAACAAUACUCCAGACAGAAA----UAUAA ...(((((((...((((((....(((((...)))))...))))))...)))))))..(((((......(((((((.....))))))).........)))))..----..... ( -21.96) >consensus UACAUAUUAUUUAGAAAAAGAGUUCUGGAUUCUAGAUUCUUUUUCAUUGUAAUGUUCUCUGUACUAAGUGUUCCGCACAUUGGAACAAUACUCCAGACAGAAA____UAUAA ...(((((((...((((((((((.((((...))))))))))))))...)))))))..(((((......(((((((.....))))))).........)))))........... (-17.69 = -19.26 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:19 2006