| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,369,785 – 21,369,896 |
| Length | 111 |
| Max. P | 0.590305 |
| Location | 21,369,785 – 21,369,896 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.82 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -21.33 |
| Energy contribution | -20.97 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21369785 111 + 22407834 ACA-AAGUUAAAAUGGCCGAUAAAAAAAUUGGUGAAUACUAUGCACCACCUGUGAAAAUGGGCAAAUGGGAGGGUUUCAAAAAAUUCCUAUGGAACAGUGAAACUAGCCAAU .((-.(((.....(.((((((......)))))).)..))).)).....(((((....)))))......((..(((((((.....((((...))))...)))))))..))... ( -24.20) >DroVir_CAF1 61765 111 + 1 AAA-AAAAAACAAUGGCCGACAAGAAGAUUGGUGAAUACUACUCGCCACCGCCAAAGAUGGGCAAAUGGGAGGGUUUCAGAAAAUUCCUAUGGAACAGUGAAACUAGCCAAU ...-.........((((............((((((.......))))))(((((.......)))..(((((((..((....))..))))))))).............)))).. ( -25.00) >DroGri_CAF1 66062 106 + 1 GC------UAAAAUGGCCGACAAGAAGAUUGGUGAAUACUAUUCGCCGCCGCCAAAGAUGGGCAAAUGGGAGGGUUUCAGAAAAUUCCUAUGGAACAGUGAAACUAGCCAAU ..------......((((.....)......(((((((...))))))))))(((.......))).....((..(((((((.....((((...))))...)))))))..))... ( -26.30) >DroWil_CAF1 49948 107 + 1 -----CACAAAAAUGGCCGAUAAGAAAAUUGGUGAAUAUUAUGCGCCACCGCCGAAAAUGGGCAAGUGGGAGGGUUUCAAAAAAUUCAUAUGGAACAGUGAAACUAGCCAAU -----(((.....(.((((((......)))))).)......(((.(((..........)))))).)))((..(((((((.....(((....)))....)))))))..))... ( -24.90) >DroMoj_CAF1 65299 106 + 1 CC------AAAAAUGGCCGACAAGAAGAUUGGUGAAUACUAUGCGCCACCGCCAAAGAUGGGCAAAUGGGAGGGUUUCAGAAAAUUCAUAUGGAACAGUGAAACUAGCCAAU ((------(....(((((.....).....(((((.........)))))..))))....))).......((..(((((((.....(((....)))....)))))))..))... ( -21.30) >DroPer_CAF1 54636 112 + 1 AAAGCAGUAAAAAUGGCCGACAAGAAAAUUGGUGAAUAUUACACGCCGCCGGUAAAAAUGGGCAAAUGGGAGGGUUUCAAAAAAUUCCUAUGGAACAGUGAAACUAGCCAAU ...((.((((.(.(.(((((........))))).).).))))..)).(((.((....)).))).....((..(((((((.....((((...))))...)))))))..))... ( -25.80) >consensus AC___A__AAAAAUGGCCGACAAGAAAAUUGGUGAAUACUAUGCGCCACCGCCAAAAAUGGGCAAAUGGGAGGGUUUCAAAAAAUUCCUAUGGAACAGUGAAACUAGCCAAU .............((.(((..........(((((.........)))))..........))).))....((..(((((((.....(((.....)))...)))))))..))... (-21.33 = -20.97 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:19 2006