Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,362,204 – 21,362,324 |
Length | 120 |
Max. P | 0.739368 |
Location | 21,362,204 – 21,362,324 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.50 |
Mean single sequence MFE | -43.54 |
Consensus MFE | -25.39 |
Energy contribution | -26.39 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.31 |
Mean z-score | -1.71 |
Structure conservation index | 0.58 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21362204 120 + 22407834 UGAAGGCGAUGGGCGUCGCCGUGGACAUGGUGGCUAGUGGUACAGCUCCCAAGAUAAUUCAGCCGGAAGUGGGGGCAACCUACGACCCGGCUAUGUUUAAAACAGAAAAUCAGGUUAUCA ....((((((....)))))).......(((..(((........)))..))).(((((((.((((((..(((((.....)))))...)))))).(((.....)))........))))))). ( -41.80) >DroPse_CAF1 43270 120 + 1 UCAAGGCCAUGGGUGUGGCCGUGGACAUGGUGGCCAAUGGCACGGCUCCAAAGAUAACCCAAACGGAGAUCGGGGCCACCUACGAUCCGGCCAUGUUCAAGGCCGAUAAUCAGUUGAUCA ....((((.((..((((((((.((.(..(((((((.......(((((((...............)))).))).)))))))...).))))))))))..)).))))................ ( -49.36) >DroGri_CAF1 55157 120 + 1 UUAAGGCAAUGGUCCUGGCCGUGGACAUGGUCGCCAAGGGCACGGCACCAAAGAUCGUGCAAACUGAGGUGGGCGCCACCUAUGAUCCCGCCAUGUUUCGGGCAGAGAACCAGAUACUGA ...((....((((((((.(((.((((((((.((....(((((((((......).))))))......((((((...)))))).....))))))))))))))).))).).))))....)).. ( -44.30) >DroMoj_CAF1 56045 120 + 1 UGAAGGCCAUGGGCUUGGCUGUGGACAUGGUAGCCGAUGGCACAGCGCCCAAGAUAGUUCAGACUGAGGUGGGCGCCACCUACGAUCCAGCCAUGUUCAAGGUGGAGAAUCAACAGAUUU .....(((.(((((.((((((.((.(..(((.(((...)))...(((((((...((((....))))...))))))).)))...).)))))))).))))).)))...(((((....))))) ( -44.60) >DroAna_CAF1 37949 120 + 1 UCAAAGCUAUGGGAGUUGCCGUCGAUAUGGUAGCCAAUGGAUCUGCCCCCAAAAUAACACAGACAGAGGUGGGUGCUACCUACGAUCCGGCCAUGUUCAAAGCGGAGAACCAGGUGCUCA .....(((.((((.((.(((((((.((.((((((..........((((((.................)).)))))))))))))))..)))).)).)))).))).(((.((...)).))). ( -31.83) >DroPer_CAF1 44313 120 + 1 UCAAGGCCAUGGGUGUGGCCGUGGACAUGGUGGCCAAUGGCACGGCUCCAAAGAUAACCCAAACGGAGAUCGGGGCCACCUACGAUCCGGCCAUGUUCAAGGCCGAUAAUCAGUUGAUCA ....((((.((..((((((((.((.(..(((((((.......(((((((...............)))).))).)))))))...).))))))))))..)).))))................ ( -49.36) >consensus UCAAGGCCAUGGGCGUGGCCGUGGACAUGGUGGCCAAUGGCACGGCUCCAAAGAUAACCCAAACGGAGGUGGGGGCCACCUACGAUCCGGCCAUGUUCAAGGCAGAGAAUCAGGUGAUCA .....(((.((((((((((((.......(((.(((...)))...(((((......................))))).))).......)))))))))))).)))................. (-25.39 = -26.39 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:18 2006