| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,359,766 – 21,359,883 |
| Length | 117 |
| Max. P | 0.851306 |
| Location | 21,359,766 – 21,359,883 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.99 |
| Mean single sequence MFE | -19.53 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.46 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21359766 117 - 22407834 UCUCAGGACC--UUUUUUAUCCUCAAAGAGAAAGG-AAUAUCAGUGAACAAAAAACAAGAACAUUGAUAGAUUUUCGUGCAAUGGCAAAAUACAGAACAUAAGAAGAAACGGAGCCAUGC .....((.((--((((((((..((.....(((((.-..((((((((...............))))))))..))))).(((....))).......))..))))))))....))..)).... ( -18.76) >DroSec_CAF1 69211 98 - 1 UCUCAGAACCUCUUUUUUAUCCUCAAAGAAAGAGGGAUUAUCAGUGAACAAAAAACAAUAACAUUGAUAGAUUUUCGUUUAAUGUAAAAUUACAGAAC---------------------- .....(((((((((((((.......))))))))))..(((((((((...............)))))))))...)))((((..((((....))))))))---------------------- ( -19.26) >DroSim_CAF1 55915 98 - 1 UCUCAGGACCUCUUUUUUAUCCUCAAAGAAAGAGGGAUUAUCAGUGAACAAAAAACAAUAACAUUGAUAGAUUUUCGUGGAAUGUCAAAUUACAGAAC---------------------- ((.((.((((((((((((.......))))))))))..(((((((((...............)))))))))....)).)))).................---------------------- ( -20.56) >consensus UCUCAGGACCUCUUUUUUAUCCUCAAAGAAAGAGGGAUUAUCAGUGAACAAAAAACAAUAACAUUGAUAGAUUUUCGUGCAAUGUCAAAUUACAGAAC______________________ .....(((((((((((((.......))))))))))...((((((((...............))))))))....)))............................................ (-14.23 = -14.46 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:17 2006