Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,349,097 – 21,349,194 |
Length | 97 |
Max. P | 0.680838 |
Location | 21,349,097 – 21,349,194 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.23 |
Mean single sequence MFE | -18.49 |
Consensus MFE | -14.56 |
Energy contribution | -13.78 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.52 |
Mean z-score | -1.15 |
Structure conservation index | 0.79 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21349097 97 + 22407834 UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-AAGAAAAUAAUUAAAGAAAGAAUUUAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC ...........(((.((..-.((((((((...-.............)))))))).....((((((((((((........)))))))))))))).))).. ( -21.09) >DroSec_CAF1 58711 96 + 1 UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-AAGAAAAGAAUAAAA-AAAACAUUUAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC ..((...(((((((.....-....(((((...-.....))))).....-....)))))))(((((((((((........))))))))))).))...... ( -18.47) >DroSim_CAF1 45197 96 + 1 UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-AAGAAAAGAAUAAAA-AAAACAUUUAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC ..((...(((((((.....-....(((((...-.....))))).....-....)))))))(((((((((((........))))))))))).))...... ( -18.47) >DroEre_CAF1 41373 97 + 1 UAUCAGGGUAAGUGGUCAG-AUCUUUCUUACA-GAGAAAUGAAUAAAAAAAAGAAAUCAUUAUAGGUUUUCAGUGCAUAGAGAACUUGGAAGAGUACAC ...........(((.((..-.((((((((...-)))))).))....................(((((((((........)))))))))...)).))).. ( -15.50) >DroYak_CAF1 45892 97 + 1 UAUCAGGGUAAGUUGACAG-AACUUUCUUCCU-AAGAAAAUAUUAUAUGAAAGUAUUCAUUUCAGGUUUUCAGUGCAUAGAGCACUUGGAAGAGUACAC .......(((((((.....-))))(((((((.-..((((((.....(((((....))))).....))))))(((((.....))))).)))))))))).. ( -23.00) >DroAna_CAF1 29604 99 + 1 UACCAGGGUAAAUAUUUAUUAGCCUUUUAAUAUUAGAAAGCAUAUUUAUAUAGAAUCCCCUUUAGGGUAUCAAUCCAUUGAGUGUUUGGAGGAGUAUAC .....((((..((((..((..((.(((((....))))).))..))..))))...))))((((((((...((((....))))...))))))))....... ( -14.40) >consensus UAUCAGGGUAAGUGGUCAG_AUCUUUCUUACA_AAGAAAAGAAUAAAA_AAAGAAUUCAUUUCAGGUUUUCAGUGCAUAGAAAGCUUGGAAGAGUAUAC ...........(((.((......((((((....))))))....................((((((((((((........)))))))))))))).))).. (-14.56 = -13.78 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:13 2006