Locus 7661

Sequence ID 2L_DroMel_CAF1
Location 21,343,670 – 21,343,815
Length 145
Max. P 0.780071
window12306 window12307

overview

Window 6

Location 21,343,670 – 21,343,775
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -23.50
Consensus MFE -17.16
Energy contribution -15.80
Covariance contribution -1.36
Combinations/Pair 1.27
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value 0.55
SVM RNA-class probability 0.780071
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21343670 105 + 22407834
CAUUAUAUUUCUCUUAUCUAAC-AAAGCUCACUGGGCUUCUUAUUUUUCUGGUGGGAGGCAUGGUCCAACUAAACUAUGCACAUUAUUCGAACUUCGUUAGCGAUC
.................(((((-.((((((((..((...........))..)))))..(((((((........)))))))............))).)))))..... ( -21.90)
>DroPse_CAF1 29424 94 + 1
------------UUAAUCUCGCUAUAGCUCACUGGACUGCUCAUCUUUUUGGUGGGUGGCAUGGUCCAAUUGAAUUAUGCCCACUAUUCGAACUUUGUUAGUGAUC
------------........((....))(((((((...(((((((.....)))))))((((((((.(....).))))))))................))))))).. ( -24.00)
>DroEre_CAF1 36926 103 + 1
CAUUGUAUG--UCUUAUCUAAC-AAAGCUCACUGGACUUCUUAUCUUUCUGGUGGGAGGCAUGGUCCAACUAAACUAUGCACACUAUUCGAACUUCGUUAGCGAUC
.........--......(((((-.((((((((..((...........))..)))))..(((((((........)))))))............))).)))))..... ( -22.80)
>DroYak_CAF1 41656 105 + 1
CAUUAUAUGUAUCUUAUCUAAC-AAAGCUCACUGGACUUCUUAUUUUUCUGGUGGGAGGCAUGGUCCAACUAAACUAUGCACACUAUUCGAACUUCGUUAGCGAUC
.................(((((-.((((((((..((...........))..)))))..(((((((........)))))))............))).)))))..... ( -22.80)
>DroAna_CAF1 27421 102 + 1
G---CUAUUUAUUUUAUCUACU-UUAGCUAACUGGACUACUCAUCUUUUUGGUGGGUGGAAUGGUCCAAUUGAAUUAUGCACAUUAUUCAAACUUUGUUAGUGACC
.---..................-...(((((((((((((((((((.....))))))).....)))))).((((((.((....)).)))))).....)))))).... ( -23.70)
>DroPer_CAF1 30622 94 + 1
------------UUAAUCUCGCUAUAGCUCACUGGACUGCUCAUCUUUCUGGUGGGUGGCAUGGUCCAAUUGAAUUAUGCCCACUAUUCGAACUUUGUUAGUGAUC
------------......((((((..((((((..((..(.....)..))..))))))((((((((.(....).)))))))).................)))))).. ( -25.80)
>consensus
C____UAU___UCUUAUCUAAC_AAAGCUCACUGGACUUCUCAUCUUUCUGGUGGGAGGCAUGGUCCAACUAAACUAUGCACACUAUUCGAACUUCGUUAGCGAUC
..........................(((.((.((..((((((((.....))))))))(((((((........)))))))............))..)).))).... (-17.16 = -15.80 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 21,343,695 – 21,343,815
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.28
Mean single sequence MFE -38.43
Consensus MFE -22.41
Energy contribution -22.63
Covariance contribution 0.23
Combinations/Pair 1.42
Mean z-score -1.91
Structure conservation index 0.58
SVM decision value 0.07
SVM RNA-class probability 0.568203
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21343695 120 + 22407834
GCUCACUGGGCUUCUUAUUUUUCUGGUGGGAGGCAUGGUCCAACUAAACUAUGCACAUUAUUCGAACUUCGUUAGCGAUCACGUCUGGACCGCUCCUAUCAUACUUAUGAUUGUCGGUGC
...((((((.(...((((.....((((((((((((((((........)))))))......((((.((.(((....)))....)).))))...))))))))).....))))..))))))). ( -30.50)
>DroPse_CAF1 29438 120 + 1
GCUCACUGGACUGCUCAUCUUUUUGGUGGGUGGCAUGGUCCAAUUGAAUUAUGCCCACUAUUCGAACUUUGUUAGUGAUCAUAUAUGGACCGCACCCAUUAUACUGAUGAUUGUAGGUGC
...((((..((...(((((....(((((((((...(((((((.......((((..(((((..(((...))).)))))..))))..))))))))))))))))....)))))..)).)))). ( -38.30)
>DroGri_CAF1 39249 120 + 1
GCUGACUGGUCUGCUCAUCCUGAUGGUGGGCGCCAUGGUGCAGCUGAACUAUGCGCAUUACUCGAAUUUUGUCAGUGAUCAUAUAUGGACCGCACCCAUUAUACUGAUGGUUGUUGGCGC
((..((.((((((((((((.....)))))))((((((((........)))))).))((((((.((......)))))))).......)))))....(((((.....)))))..))..)).. ( -39.40)
>DroWil_CAF1 30408 120 + 1
GCUGACUGGAUUGCUCAUCUUCCUAGUCGGUGGCAUGGUCCAGUUGAACUAUGCUCAUUAUUCGAACUUUGUAAGCGAUCACAUUUGGACUGCGCCAAUCAUACUGAUGAUUGUCGGCGC
.(..(.(((((((((.((......(((((((((((((((.(....).))))))).)))....)).)))..)).))))))).)).)..)...(((((((((((....))))))...))))) ( -33.70)
>DroMoj_CAF1 41129 120 + 1
GCUCACGGGUCUACUGAUCCUGUUGGUGGGCGCAAUGGUGCAGCUGAACUAUGCUCAUUAUUCGAACUUUGUGAGUGAUCAUAUUUGGACGGCGCCCAUUAUACUGAUGGUUGUGGGCGC
(((((((((((....))))).(((((((((((((((((((.(((........))))))))))((..(..(((((....)))))...)..)))))))))))).))........)))))).. ( -49.00)
>DroAna_CAF1 27443 120 + 1
GCUAACUGGACUACUCAUCUUUUUGGUGGGUGGAAUGGUCCAAUUGAAUUAUGCACAUUAUUCAAACUUUGUUAGUGACCACAUUUGGACGGCUCCCAUCAUUCUUAUGAUUGUGGGAGC
(((((((((((((((((((.....))))))).....)))))).((((((.((....)).)))))).....))))))..(((....)))...(((((((.((.((....)).))))))))) ( -39.70)
>consensus
GCUCACUGGACUGCUCAUCUUUUUGGUGGGUGGCAUGGUCCAACUGAACUAUGCACAUUAUUCGAACUUUGUUAGUGAUCACAUUUGGACCGCACCCAUCAUACUGAUGAUUGUCGGCGC
((((((.....((((((((.....))))))))(((((((........)))))))................))))))...............(((((.(((((....)))))....))))) (-22.41 = -22.63 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:10 2006