| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,328,195 – 21,328,294 |
| Length | 99 |
| Max. P | 0.710639 |
| Location | 21,328,195 – 21,328,294 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 78.12 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -11.48 |
| Energy contribution | -13.72 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21328195 99 - 22407834 UCAUGUUUUGAGUUUCUCCCGAAACCAAAGUCAUGUGUUCUUCCUAUAUUCGCCCAGUAAAUCUAUAUCAAUAUAGAUUUCAUAGGAUCGAACAUGCUC .(((((((((.(((((....)))))))))).))))(((((.((((((.........(.(((((((((....))))))))))))))))..)))))..... ( -25.60) >DroSec_CAF1 27715 96 - 1 UCAUGUUUUGUCUUUUUACCGAAACGAGAGUCAUGU---CUUCCUAUAUUAGCCCAGUAAAUCUAUAUAAAUAUGGAUUUUAUAGGAUCGAACAUGCUC ...(((((((.........))))))).(((.(((((---..(((((((..........(((((((((....))))))))))))))))....)))))))) ( -22.50) >DroSim_CAF1 27473 96 - 1 UCAUGUUUUGUCUUUUUACCGAAACGAGAGUCAUGC---CUUCCUAUAUUAGCCCAGUAAAUAUAUAUAAAUAUAGAUUUUAUAGGAUCGAACAUGCUC ...(((((((.........))))))).(((.((((.---..(((((((..(..........(((((....)))))..)..))))))).....))))))) ( -15.10) >DroYak_CAF1 30828 89 - 1 -----ACUUG-CUGACUCUCGGACAGAGAAUCAUGU---CUUCCUAUAUUCGUCCAGGAAGG-CAUAUUAAUAAUGACUUUAUGGUAUCGAGCAUGCUC -----...((-((((.((((.....)))).))((((---((((((..........)))))))-)))........................))))..... ( -22.10) >consensus UCAUGUUUUGUCUUUCUACCGAAACGAGAGUCAUGU___CUUCCUAUAUUAGCCCAGUAAAUCUAUAUAAAUAUAGAUUUUAUAGGAUCGAACAUGCUC ....((((((.........))))))..(((.(((((.....(((((((..........(((((((((....))))))))))))))))....)))))))) (-11.48 = -13.72 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:08 2006