Locus 766

Sequence ID 2L_DroMel_CAF1
Location 2,184,383 – 2,184,490
Length 107
Max. P 0.808577
window1257

overview

Window 7

Location 2,184,383 – 2,184,490
Length 107
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 80.69
Mean single sequence MFE -28.95
Consensus MFE -19.74
Energy contribution -19.49
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -1.89
Structure conservation index 0.68
SVM decision value 0.64
SVM RNA-class probability 0.808577
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2184383 107 + 22407834
--CUCUACACCAGAUACUCAGGAUUUUCUCCAAGUGCAG-------CAUAAAUGCUAAAUUGAUUGAGGCAUAUUGCCGACAUAUCGCGAUGUUGUCUCGAUUAUAUAACUUCCUC
--..........(.((((..(((.....))).)))))((-------((....))))....(((((((((((((((((.((....)))))))).)))))))))))............ ( -24.50)
>DroSim_CAF1 25620 114 + 1
--CUCUGCUGCAGAUACUCAAGAUUUUCUCCCAGUGCAGUCUGGCUCAUAAAUGCUAAAUUGAUUGAGGCAUAUUGCCGACAUAUAGCGAUGUUGUCUCGAUUAUAUAACUUCCUC
--....(((((....(((..((.....))...)))))))).((((........))))...(((((((((((((((((.........)))))).)))))))))))............ ( -25.70)
>DroEre_CAF1 28449 116 + 1
UGCUUGGCUGUUAGGAAUCCCGGUUUUCUUCGGGUGCAGGCUGGCUCAUAAAUGCUGAAUUGAUUGAGGCAUAUUGCCGACAUAUCGCGAUGUUGCCUCGAUUAUAUAACUUCCUC
.(((.(.((((.......(((((......))))).)))).).)))...............(((((((((((((((((.((....)))))))).)))))))))))............ ( -37.00)
>DroYak_CAF1 29289 110 + 1
UGCA---CUUUUACCAGAC---AUUUUCUCCAAGUGCAGACUGGCUCACAAAUGCUAAACUGAUUGAGGCAUAUUGCCGACACAUCGCGAUGUUGUCUCGAUUAUAUAACUUCCUC
((((---(((.....(((.---....)))..)))))))...((((........))))...(((((((((((((((((.((....)))))))).)))))))))))............ ( -28.60)
>consensus
__CUCUGCUGCAAAUACUCA_GAUUUUCUCCAAGUGCAG_CUGGCUCAUAAAUGCUAAAUUGAUUGAGGCAUAUUGCCGACAUAUCGCGAUGUUGUCUCGAUUAUAUAACUUCCUC
...............................(((((((..............))).....(((((((((((((((((.........)))))).)))))))))))....)))).... (-19.74 = -19.49 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:05 2006