| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,327,413 – 21,327,518 |
| Length | 105 |
| Max. P | 0.597746 |
| Location | 21,327,413 – 21,327,518 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Mean single sequence MFE | -42.30 |
| Consensus MFE | -28.09 |
| Energy contribution | -28.73 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21327413 105 + 22407834 GCAACGAGGAGGCGGCGGCCUUGGAGCUGAACUCGGGGGCCGUUGGUGGGGUGCUGCUCUCAAAUCUUUCCUCCGAAAGUGGAGGACC-GGUAGC--GAGUGGUAUUC ............((((((((((.(((.....))).))))))))))...((((((..(((.(..(((..(((((((....)))))))..-))).).--)))..)))))) ( -45.20) >DroGri_CAF1 31476 105 + 1 GGAACGAGGAGGCGGCUGCCAUGGAGCUGAAUGGUGGUGCUGUUGGUGGUGUGCUGCUGACGGGCUUAACCGGUGAGGUUGGUGGUGC-AACAAC--AAAUGGUGGGG .........((((.((..((((........))))..)).((((..(..(....)..)..)))))))).((((.((..((((......)-)))..)--)..)))).... ( -32.80) >DroSec_CAF1 26863 105 + 1 GCAAUGAGGAGGCGGCGGCCUUGGAGCUGAACUCGGGGGCCGUUGGUGGGGUGCUGCUCUCAAAUCUUACCUCCGAAAGUGGGGGACC-AGUAGC--GAGUGGUAUUG ((.....(((((((((((((((.(((.....))).)))))))))).(((((......))))).......)))))...(.(((....))-).).))--........... ( -42.30) >DroSim_CAF1 26625 105 + 1 GCAACGAGGAGGCGGCGGCCUUGGAGCUGAACUCGGGGGCCGUUGGUGGGGUGCUGCUCUCAAAUCUUACCUCCGAAAGUGGGGGACC-AGUAGC--GAGUGGUAUUG ((.((..(((((((((((((((.(((.....))).)))))))))).(((((......))))).......))))).....(((....))-))).))--........... ( -43.00) >DroEre_CAF1 26190 105 + 1 GCAACGAGGAGGCGGCGGCCUUGGAGCUGAACUCGGGGGCCGUUGGCGGAGUGUUGCUCUCAAGUCUUGCCUCCGAAAGUGGAGGGCC-GGUAGC--GAGUGGCAUUC ..........(.((((((((((.(((.....))).)))))))))).).((((((..(((..........((((((....))))))((.-....))--)))..)))))) ( -47.90) >DroAna_CAF1 20474 108 + 1 GCAACGAAGAGGCCGCAGCCAUGGAGCUGAACUCUGGAGCCGUCGGCGGCGUUCUGCUCUCCAAUCUUACGGCGGAGAAUGGAGGAGGAGGUGGCUUGGGUGGCGCCA .......((((....((((......))))..))))((.(((..((((.((.((((.(.(((((.((((......)))).)))))))))).)).)))..)..))).)). ( -42.60) >consensus GCAACGAGGAGGCGGCGGCCUUGGAGCUGAACUCGGGGGCCGUUGGUGGGGUGCUGCUCUCAAAUCUUACCUCCGAAAGUGGAGGACC_AGUAGC__GAGUGGUAUUG ..........(.((((((((((.(((.....))).)))))))))).)..((((((((((......((..((((((....))))))....))......)))))))))). (-28.09 = -28.73 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:05 2006