Locus 7657

Sequence ID 2L_DroMel_CAF1
Location 21,326,663 – 21,326,770
Length 107
Max. P 0.799618
window12301

overview

Window 1

Location 21,326,663 – 21,326,770
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.94
Mean single sequence MFE -32.68
Consensus MFE -20.49
Energy contribution -20.18
Covariance contribution -0.30
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.63
SVM decision value 0.61
SVM RNA-class probability 0.799618
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21326663 107 - 22407834
GCAAUUGAUGUUGUAAUUGCAUAAAAUCAUGGCUGCCCAUUAGUUCCGUUAGCUGUGUGGCAUCCAUGAUUGUUGAAGCCUUCCGAUGGCUGAACAAAAAUCGUCGA
(((((((......)))))))....((((((((.(((((((.((((.....))))))).)))).))))))))(((..((((.......)))).)))............ ( -34.40)
>DroPse_CAF1 20121 107 - 1
GCAACUGCUGCUGGAGCUGCAUAAAGUCAUGGCUACUCAUCAGUUCCGUCAGCUGUGUGGCAUCCAUGCUUGUUGGGGGUCAGUAUUGAAGGGGCUAAAAAUGUCAG
((..((((((.((((((((.....(((....)))......)))))))).))))....((((..(((.......)))..)))).......))..))............ ( -31.00)
>DroSec_CAF1 26120 107 - 1
GCAAUUGAUGUUGUAAUUGCAUAAAAUCAUGGCUGCCCAUUAGUUCCGUUAGCUGUGUGGCAUCCAUGAUUGUUGAAGCCUUCUGUUGGCGGAACAAAAAUCGUCGA
(((((((......)))))))....((((((((.(((((((.((((.....))))))).)))).))))))))(((...(((.......)))..)))............ ( -32.70)
>DroEre_CAF1 25440 107 - 1
GCAAUUGAUGUUGUAACUGCAUAAAAUCAUGGCUGCCCAUUAGUUCCGUUAGCUGUGUGGCAUCCAUGGUUGUUGAAGCUUCGCAGUGGCGCAACAAAAAUGGCCGA
((.(((..((((((.(((((....((((((((.(((((((.((((.....))))))).)))).))))))))...((....)))))))...))))))..))).))... ( -36.60)
>DroYak_CAF1 29209 93 - 1
GCAAUUGAUGUUGCAAUUGCAUAAAAUCAUGGCUGCCCAUUAGUUCCGUUAGCUGUGUGGCAUCCAUGGUUGUUGA--------------GCAACAAAAGUUUUCGA
(((((((......)))))))....((((((((.(((((((.((((.....))))))).)))).)))))))).((((--------------(.(((....)))))))) ( -30.40)
>DroPer_CAF1 21959 107 - 1
GCAACUGCUGCUGGAGCUGCAUAAAGUCAUGGCUACUCAUCAGUUCCGUCAGCUGUGUGGCAUCCAUGCUUGUUGGGGGUCAGUAUUGAAGGGGCUAAAAAUGUCAG
((..((((((.((((((((.....(((....)))......)))))))).))))....((((..(((.......)))..)))).......))..))............ ( -31.00)
>consensus
GCAAUUGAUGUUGUAACUGCAUAAAAUCAUGGCUGCCCAUUAGUUCCGUUAGCUGUGUGGCAUCCAUGAUUGUUGAAGCUUAGUAUUGGCGGAACAAAAAUUGUCGA
(((.(((......))).)))....((((((((.((((((.(((((.....))))))).)))).)))))))).................................... (-20.49 = -20.18 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:04 2006