Locus 7656

Sequence ID 2L_DroMel_CAF1
Location 21,313,877 – 21,313,995
Length 118
Max. P 0.998631
window12300

overview

Window 0

Location 21,313,877 – 21,313,995
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.04
Mean single sequence MFE -38.45
Consensus MFE -35.93
Energy contribution -36.53
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.93
SVM decision value 3.17
SVM RNA-class probability 0.998631
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21313877 118 - 22407834
AGCUACAGAAGCGAGCCGCGACGCGAAGACUGGGUUAGUAAAU--AUGGCGAUGAAGAUGCAAGGCGGUACUAAAAGCUGCCUUUCAUAUAAGUUGCAUAUCGCUCUGGCUCGUUAAAUC
.........(((((((((.((.((((..((((...))))....--...(((((....(((.((((((((.......)))))))).)))....)))))...)))))))))))))))..... ( -41.60)
>DroSec_CAF1 15670 117 - 1
AGCUACUGAAGCGAGCCGCGACGCGAAGACUGGGUUAGUAAAU--AUGGCGAUGAAGAGGUAAGGCGGUACUAAAAGCUGCCUUUCAUAUA-GUUGCAUAUCGCUCUGGCUCGUUAAAUC
.........(((((((((.((.((((..((((...))))....--...(((((......(.((((((((.......)))))))).).....-)))))...)))))))))))))))..... ( -38.30)
>DroSim_CAF1 15142 117 - 1
AGCUACUGAAGCGAGCCGCGACGCGAAGACUGGGUUAGUAAAU--AUGGCGAUGAAGAGGCAAGGCGGUACUAAAAGCUGCCUUUCAUAUA-GUUGCAUAUCGCUCUGGCUCGUUAAAUC
.........(((((((((.((.((((..((((...))))....--...(((((......(.((((((((.......)))))))).).....-)))))...)))))))))))))))..... ( -38.30)
>DroEre_CAF1 15510 120 - 1
AGCUACUGAAGCGAGCCGCGACGCGAAGACUGGGUUAGUAAAUACAUGGCGAUGAAGAGCCCAGGCGGUACUAAAAGCUGCCUUUCAUAUAAGUUGCAUAUCGCUCUGGCUCGUUAAAUC
.........(((((((((.((.((((.(((((((((.....((........))....)))))(((((((.......)))))))........)))).....)))))))))))))))..... ( -37.70)
>DroYak_CAF1 17838 118 - 1
AACUACUGAAGCGAGCCGCGACGCGAAGACUGGGUUAGUAAAU--AUGGCGAUGAAGAGUCCAGGCGGUACUAAAAGCUGCCUUUCAUAUAAGUUGCAUAUCGCUCAGGCUCGUUAAAUC
.........((((((((..((.((((..((((...))))....--...(((((.........(((((((.......))))))).........)))))...)))))).))))))))..... ( -36.37)
>consensus
AGCUACUGAAGCGAGCCGCGACGCGAAGACUGGGUUAGUAAAU__AUGGCGAUGAAGAGGCAAGGCGGUACUAAAAGCUGCCUUUCAUAUAAGUUGCAUAUCGCUCUGGCUCGUUAAAUC
.........(((((((((.((.((((..((((...)))).........(((((........((((((((.......))))))))........)))))...)))))))))))))))..... (-35.93 = -36.53 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:03 2006