| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,305,939 – 21,306,045 |
| Length | 106 |
| Max. P | 0.533694 |
| Location | 21,305,939 – 21,306,045 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -27.05 |
| Consensus MFE | -17.91 |
| Energy contribution | -18.05 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21305939 106 + 22407834 U---CAAUUCGAUGCUUACAAACAGGCGGGCGAUGCACAGCCAAAACCCGUGCUCGUAAAGGCCGAGCAAAAGGUGGUAAGUCAUGAUAUGAG-UGUGCAUUGGAUAUAA .---..(((((((((.(((.....(((..((...))...)))...(((..((((((.......))))))...))).................)-)).))))))))).... ( -30.90) >DroSec_CAF1 7147 107 + 1 UU--CAAUUCGAAAGUUACAAACAGACGGUCGAUGCACUGCCAAAACCCGUGCUCGUAAAGGCCGAGCAAAAGGUGGUAAGUCAUAAUAUGAG-UGUGCAUUGUACUUAU ..--.....(....)............((((((((((((((((....((.((((((.......))))))...)))))))(.((((...)))).-))))))))).)))... ( -28.40) >DroSim_CAF1 6358 109 + 1 UCAACAAUUCGAUAGUUACAAACAGACGGUCGAUGCACUGCCAAAACCCGUGCUCGUAAAGGCCGAGCAAAAGGUGGUAAGUCAUAAUAUGAG-UGUGCAUUGUACUUAU ...((((.(((((.(((.......))).)))))((((((((((....((.((((((.......))))))...)))))))(.((((...)))).-))))))))))...... ( -29.30) >DroEre_CAF1 6631 106 + 1 U---CAAUUCGAUGCUUACAAACAGCCAGGCGAUGCACCACCAAAACCAGUGCUCGUUAAGGCCGAGCAAAAGGUGGUAAGUCACAAUAUGAG-UGUGCAUAGGAAAUAU .---...(((.((((..(((..((.....(.(((..((((((........((((((.......))))))...))))))..))).)....))..-))))))).)))..... ( -28.10) >DroYak_CAF1 8047 105 + 1 C---CAAUUCGAUGCUUACAAACAGCCAGGCGAUGCACCGCCAAAACCCGUGUUCGUUAAGACUGAGCAAAAGGUGGUAAGUUAUAAUAUGAG-UGUGUAUUGGAAAUA- .---...((((((((.(((.....(((.((((......))))...(((..((((((.......))))))...))))))...((((...)))))-)).))))))))....- ( -25.80) >DroAna_CAF1 4716 97 + 1 A---CAAUUCGAUGCUAUCAAACAAC------AAGCAGAGCCCCAUUCCGUGCUCGUCAAAGCCGAGGAGAAGGUGGUAAGUUGAAGAAGGACACGUUCUUUG-AUA--- .---...(((((((((..........------.)))...(((((.((((..(((......)))...))))..)).)))..))))))((((((....)))))).-...--- ( -19.80) >consensus U___CAAUUCGAUGCUUACAAACAGCCGGGCGAUGCACAGCCAAAACCCGUGCUCGUAAAGGCCGAGCAAAAGGUGGUAAGUCAUAAUAUGAG_UGUGCAUUGGAAAUAU ..............................((((((((.(((...(((..((((((.......))))))...))))))...(((.....)))...))))))))....... (-17.91 = -18.05 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:00 2006